RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MYO18AQ92614 2054 aaKnown RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 C2orf71A6NGG8 1288 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 RNF103O00237 685 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 PPP1R12AO14974 1030 aaPredicted RBP12.46□□□□□ -0.42
HDAC6-230ENST00000488543 KRT16P08779 473 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 EPHB2P29323 1055 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 ELF1P32519 619 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 ALDH1A3P47895 512 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 GALNT2Q10471 571 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 AP1B1Q10567 949 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 SEMA5AQ13591 1074 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 BBS9Q3SYG4 887 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF534Q76KX8 674 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 CAND1Q86VP6 1230 aaKnown RBP12.46□□□□□ -0.42
HDAC6-230ENST00000488543 MRPL43Q8N983 215 aaKnown RBP12.46□□□□□ -0.42
HDAC6-230ENST00000488543 SERPINB11Q96P15 392 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 KLHL5Q96PQ7 755 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 C12orf65Q9H3J6 166 aaKnown RBP12.46□□□□□ -0.42
HDAC6-230ENST00000488543 COMMD8Q9NX08 183 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 LGALS13Q9UHV8 139 aa12.46□□□□□ -0.42
HDAC6-230ENST00000488543 DOCK4Q8N1I0 1966 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 ZDHHC11BP0C7U3 371 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TPSB2P20231 275 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 CDC25CP30307 473 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 WDR4P57081 412 aaKnown RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 EFEMP1Q12805 493 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 EFTUD2Q15029 972 aaKnown RBP eCLIP12.45□□□□□ -0.424e-8■■■■■ 45
HDAC6-230ENST00000488543 TPSAB1Q15661 275 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 SPATA21Q7Z572 469 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 C14orf80Q86SX3 495 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 MIB1Q86YT6 1006 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PDIK1LQ8N165 341 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 MCUQ8NE86 351 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 FBXO36Q8NEA4 188 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 CKAP2Q8WWK9 683 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 SIK2Q9H0K1 926 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 SLCO1B3Q9NPD5 702 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 CLIC5Q9NZA1 410 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 MCM8Q9UJA3 840 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 GRID1Q9ULK0 1009 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TLR6Q9Y2C9 796 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TEX264Q9Y6I9 313 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 NYNRINQ9P2P1 1898 aaKnown RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 CARNS1A5YM72 827 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 RASA4BC9J798 803 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PER2O15055 1255 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 RASA4O43374 803 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 AVILO75366 819 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 MAGEA3P43357 314 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 NRG1Q02297 640 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PPIDQ08752 370 aaKnown RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 DNAJC3Q13217 504 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 LILRA6Q6PI73 481 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PPP1R21Q6ZMI0 780 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 ARHGEF18Q6ZSZ5 1173 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PDZD4Q76G19 769 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 DNAJB7Q7Z6W7 309 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TCEAL8Q8IYN2 117 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PYROXD1Q8WU10 500 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 DEPDC1BQ8WUY9 529 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 N4BP2L2Q92802 583 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF512Q96ME7 567 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TTLL2Q9BWV7 592 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 PBX4Q9BYU1 374 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 CEP41Q9BYV8 373 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 VPS37BQ9H9H4 285 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 TLR9Q9NR96 1032 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 INSL5Q9Y5Q6 135 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 HS3ST4Q9Y661 456 aa12.45□□□□□ -0.42
HDAC6-230ENST00000488543 OPHN1O60890 802 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 APRTP07741 180 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 SSTR1P30872 391 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 ELK3P41970 407 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 PLD1Q13393 1074 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 PIK3R6Q5UE93 754 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 ARHGAP12Q8IWW6 846 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF683Q8IZ20 524 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 TNS4Q8IZW8 715 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF567Q8N184 647 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 ATP11CQ8NB49 1132 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 CCNYQ8ND76 341 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 AGAP11Q8TF27 550 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 HDAC11Q96DB2 347 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 MYCBPQ99417 103 aaPredicted RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 FRMD8Q9BZ67 464 aaPredicted RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 CXorf56Q9H5V9 222 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 TLR8Q9NR97 1041 aaKnown RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 RABGEF1Q9UJ41 708 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 CHMP2BQ9UQN3 213 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 DOCK6Q96HP0 2047 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 SPTBN5Q9NRC6 3674 aaKnown RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 EXOC1LA0A1B0GW35 172 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 HMBSP08397 361 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 SRGAP2BP0DMP2 458 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 NQO1P15559 274 aaKnown RBP12.44□□□□□ -0.42
HDAC6-230ENST00000488543 TSHRP16473 764 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 TAC1P20366 129 aa12.44□□□□□ -0.42
HDAC6-230ENST00000488543 PTPN3P26045 913 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms