RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 OR2T3Q8NH03 318 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 HMGB4Q8WW32 186 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 ZC3H10Q96K80 434 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 ACE2Q9BYF1 805 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 MAGEB5Q9BZ81 275 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 MUC3BQ9H195 1237 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 DONSONQ9NYP3 566 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 CTTNBP2NLQ9P2B4 639 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 SUN2Q9UH99 717 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 VPS28Q9UK41 221 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 SMG5Q9UPR3 1016 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 FANCMQ8IYD8 2048 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 TARSL2A2RTX5 802 aaKnown RBP16.29■□□□□ 0.2
UPF3A-208ENST00000484246 PROSCO94903 275 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 IGLV3-19P01714 112 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 EPHX1P07099 455 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 IL1R2P27930 398 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 EPHB2P29323 1055 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 HCAR3P49019 387 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 CLCN6P51797 869 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 KRT83P78385 493 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 GNA12Q03113 381 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 ZBTB16Q05516 673 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 BYSLQ13895 437 aaKnown RBP16.29■□□□□ 0.2
UPF3A-208ENST00000484246 CA9Q16790 459 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 MAP7D1Q3KQU3 841 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 RWDD4Q6NW29 188 aaKnown RBP16.29■□□□□ 0.2
UPF3A-208ENST00000484246 FRS2Q8WU20 508 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 SPOCK2Q92563 424 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 MKRN2Q9H000 416 aaKnown RBP16.29■□□□□ 0.2
UPF3A-208ENST00000484246 MAGEH1Q9H213 219 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 CATSPERBQ9H7T0 1116 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 PRSS16Q9NQE7 514 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 USP36Q9P275 1121 aaKnown RBP16.29■□□□□ 0.2
UPF3A-208ENST00000484246 PCSK1NQ9UHG2 260 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 VPS51Q9UID3 782 aa16.29■□□□□ 0.2
UPF3A-208ENST00000484246 A0A0D9SEW6 157 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 EDDM13A0A1B0GTR0 161 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 RAMP2O60895 175 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 ZNF217O75362 1048 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 ZMPSTE24O75844 475 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 HLA-EP13747 358 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 CYLC1P35663 651 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 HADHBP55084 474 aaKnown RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 YBEYP58557 167 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 TPI1P60174 286 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 SIM2Q14190 667 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 ASCL5Q7RTU5 278 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 UMODL1-AS1Q8N2C9 162 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 FAM71BQ8TC56 605 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 LOXL4Q96JB6 756 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 BTBD6Q96KE9 485 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 SPACA7Q96KW9 195 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 KCTD15Q96SI1 283 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 TPSD1Q9BZJ3 242 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 DHX35Q9H5Z1 703 aaKnown RBP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 NDFIP2Q9NV92 336 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 GPATCH2LQ9NWQ4 482 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 BCCIPQ9P287 314 aaKnown RBP eCLIP16.28■□□□□ 0.2
UPF3A-208ENST00000484246 SLC25A13Q9UJS0 675 aa16.28■□□□□ 0.2
UPF3A-208ENST00000484246 HAX1O00165 279 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 TCF4P15884 667 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 NNMTP40261 264 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 ARHGAP25P42331 645 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 STK19P49842 368 aaPredicted RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SLC20A2Q08357 652 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SRSF5Q13243 272 aaKnown RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 DPYSQ14117 519 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 PARP15Q460N3 678 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SPDYCQ5MJ68 293 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 C9orf64Q5T6V5 341 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 LAIR1Q6GTX8 287 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 RFX8Q6ZV50 586 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 TMPRSS6Q8IU80 811 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 TMEM139Q8IV31 216 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SH2D3CQ8N5H7 860 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 OR7D4Q8NG98 312 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SLC35G2Q8TBE7 412 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 ARHGEF2Q92974 986 aaKnown RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 RSPH9Q9H1X1 276 aaPredicted RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 NOL6Q9H6R4 1146 aaKnown RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 PRDM16Q9HAZ2 1276 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 OSGEPQ9NPF4 335 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 LUC7LQ9NQ29 371 aaKnown RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 RCOR3Q9P2K3 495 aaPredicted RBP16.27■□□□□ 0.2
UPF3A-208ENST00000484246 SLCO3A1Q9UIG8 710 aa16.27■□□□□ 0.2
UPF3A-208ENST00000484246 A0A0A6YYK5 440 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 EEF2KO00418 725 aaKnown RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 CREB3O43889 395 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 SNAP91O60641 907 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 SIN3BO75182 1162 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 NDUFA10O95299 355 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 RARAP10276 462 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 MAGEA1P43355 309 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 GEMIN4P57678 1058 aaKnown RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 ELAVL3Q14576 367 aaKnown RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 SPA17Q15506 151 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 HADHQ16836 314 aaKnown RBP16.26■□□□□ 0.19
UPF3A-208ENST00000484246 PLK5Q496M5 336 aa16.26■□□□□ 0.19
UPF3A-208ENST00000484246 DAB2IPQ5VWQ8 1189 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms