RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SEPT8Q92599 483 aa14.91□□□□□ -0.02
HDAC6-220ENST00000477528 TRPM5Q9NZQ8 1165 aa14.91□□□□□ -0.02
HDAC6-220ENST00000477528 PCDHB8Q9UN66 801 aa14.91□□□□□ -0.02
HDAC6-220ENST00000477528 ABCA3Q99758 1704 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HSPA1AP0DMV8 641 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HSPA1BP0DMV9 641 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 OR1E1P30953 314 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HSPA13P48723 471 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 POU4F1Q01851 419 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 DYNC1I2Q13409 638 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 FAM171A1Q5VUB5 890 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ELMSAN1Q6PJG2 1045 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 IZUMO2Q6UXV1 221 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 IFNEQ86WN2 208 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 PGLYRP2Q96PD5 576 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 MECRQ9BV79 373 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 UNKQ9C0B0 810 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SCUBE2Q9NQ36 999 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 NUDT5Q9UKK9 219 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 A0A087X1B8 175 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 DPYSL4O14531 572 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 UBDO15205 165 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 TMEM63AO94886 807 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 RHOCP08134 193 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CDH5P33151 784 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 RPL14P50914 215 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 POLD3Q15054 466 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 DLK2Q6UY11 383 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 NUP93Q8N1F7 819 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ZNF333Q96JL9 665 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CACYBPQ9HB71 228 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ADGRA2Q96PE1 1338 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 TGDSO95455 350 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 PSMG1O95456 288 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 PGK1P00558 417 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HIST1H2AGP0C0S8 130 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HIST1H2ADP20671 130 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 LRRC74BQ6ZQY2 392 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ARRDC4Q8NCT1 418 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 DCUN1D1Q96GG9 259 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HIST1H2AHQ96KK5 128 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CATSPER2Q96P56 530 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ZNF317Q96PQ6 595 aaPredicted RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 HIST1H2AJQ99878 128 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 H2AFJQ9BTM1 129 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 TXNRD2Q9NNW7 524 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ZNF212Q9UDV6 495 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 LRCH1Q9Y2L9 728 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 STRCQ7RTU9 1775 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SYCE1LA8MT33 242 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 FAM155BO75949 473 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 PIGNO95427 931 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SERPINH1P50454 418 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SLC25A11Q02978 314 aaKnown RBP14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CDH18Q13634 790 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 PTK2BQ14289 1009 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CYTH1Q15438 398 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SH3PXD2AQ5TCZ1 1133 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CLNKQ7Z7G1 428 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 CCDC185Q8N715 623 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SYT11Q9BT88 431 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 IL1RL2Q9HB29 575 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 ARHGEF4Q9NR80 690 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SH3BP1Q9Y3L3 701 aa14.9□□□□□ -0.02
HDAC6-220ENST00000477528 SERPINA6P08185 405 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 ZNF132P52740 706 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 AASDHQ4L235 1098 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 SWT1Q5T5J6 900 aaKnown RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 EMC10Q5UCC4 262 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 SMYD5Q6GMV2 418 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 NETO2Q8NC67 525 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 RFWD2Q8NHY2 731 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 ZBED3Q96IU2 234 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 KLHL4Q9C0H6 718 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 FBXO6Q9NRD1 293 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 SNX15Q9NRS6 342 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 GLTPD2A6NH11 291 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 TMEM114B3SHH9 223 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 HOXB8P17481 243 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 TFE3P19532 575 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 LILRA4P59901 499 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 C6orf10Q5SRN2 563 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 SNX19Q92543 992 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 FARP1Q9Y4F1 1045 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 WFS1O76024 890 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 BANPQ8N9N5 519 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 KAT2BQ92831 832 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 PDLIM7Q9NR12 457 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 RGS18Q9NS28 235 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 GRIK3Q13003 919 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 KLF1Q13351 362 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 BRMS1LQ5PSV4 323 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 ZNF467Q7Z7K2 595 aaPredicted RBP14.89□□□□□ -0.03
HDAC6-220ENST00000477528 CEP70Q8NHQ1 597 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 PHF21BQ96EK2 531 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 TMEM169Q96HH4 297 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 SLC4A5Q9BY07 1137 aa14.89□□□□□ -0.03
HDAC6-220ENST00000477528 NHSQ6T4R5 1651 aa14.88□□□□□ -0.03
HDAC6-220ENST00000477528 PROCP04070 461 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms