RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 HSP90B2PQ58FF3 399 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 C6orf118Q5T5N4 469 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 GPR158Q5T848 1215 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 DENND2CQ68D51 928 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 GPR153Q6NV75 609 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF783Q6ZMS7 281 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 Q6ZNB5 142 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 PID1Q7Z2X4 250 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 SETD3Q86TU7 594 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC25Q86WR0 208 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 IQCKQ8N0W5 287 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF567Q8N184 647 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 GOLGA6L1Q8N7Z2 621 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 KIAA1958Q8N8K9 716 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 HJURPQ8NCD3 748 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 TSEN2Q8NCE0 465 aaKnown RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 SHKBP1Q8TBC3 707 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 MRPL38Q96DV4 380 aaKnown RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 CELF6Q96J87 481 aaKnown RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 RBM15Q96T37 977 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 SLC39A8Q9C0K1 460 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 PIDD1Q9HB75 910 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 XAB2Q9HCS7 855 aaKnown RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 MED4Q9NPJ6 270 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 SEPT10Q9P0V9 454 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 DNMT3BQ9UBC3 853 aaKnown RBP13.13□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF212Q9UDV6 495 aa13.13□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC195A0A1B0GUA6 201 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 E2F8A0AVK6 867 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 ILVBLA1L0T0 632 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 RASA4BC9J798 803 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 AP3B1O00203 1094 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 RASA4O43374 803 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 OPA1O60313 960 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 NEBLO76041 1014 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 CNTN5O94779 1100 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 NUDT17P0C025 328 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 CCNB1P14635 433 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 TSHRP16473 764 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 HOXD11P31277 338 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 LMAN1P49257 510 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 PAPOLAP51003 745 aaKnown RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 IL10RBQ08334 325 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF177Q13360 481 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 HNRNPDQ14103 355 aaKnown RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 PRPSAP1Q14558 356 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 PRSS36Q5K4E3 855 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 TMCO4Q5TGY1 634 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 B4GALNT4Q76KP1 1039 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 TFAP2DQ7Z6R9 452 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 CMTM8Q8IZV2 173 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 GDPD5Q8WTR4 605 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 MAML1Q92585 1016 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 LRRC39Q96DD0 335 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 TEKT5Q96M29 485 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF599Q96NL3 588 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 SLC22A12Q96S37 553 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 CYP2S1Q96SQ9 504 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 IL12RB2Q99665 862 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 GBA3Q9H227 469 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 KIF9Q9HAQ2 790 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 SP110Q9HB58 689 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 ETNK1Q9HBU6 452 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 HCFC1R1Q9NWW0 138 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 SMPD4Q9NXE4 827 aa13.12□□□□□ -0.31
VPS13D-205ENST00000473099 IPO11Q9UI26 975 aaKnown RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 ZFP37Q9Y6Q3 630 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-205ENST00000473099 DENND4AQ7Z401 1863 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 GOLGA6L7A0A1B0GV03 622 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 E7ESA3 106 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 KCNK1O00180 336 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 PER2O15055 1255 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 TTC4O95801 387 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 APRTP07741 180 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 ABHD2P08910 425 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 MLNP12872 115 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 WEE1P30291 646 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 MAGEA4P43358 317 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 IFNAR2P48551 515 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 NRIP1P48552 1158 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 RENBPP51606 427 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 OXCT1P55809 520 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 DNAJC21Q5F1R6 531 aaKnown RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 MPP7Q5T2T1 576 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 RFWD3Q6PCD5 774 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 ADGRD2Q7Z7M1 963 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 RBM23Q86U06 439 aaKnown RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC117Q8IWD4 279 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 TP53INP2Q8IXH6 220 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 BBS5Q8N3I7 341 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 CCDC33Q8N5R6 958 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 DEFB123Q8N688 67 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 ZNF557Q8N988 423 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 ADAMTS19Q8TE59 1207 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 SMG7Q92540 1137 aaKnown RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 TIFAQ96CG3 184 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 SLC46A2Q9BY10 475 aa13.11□□□□□ -0.31
VPS13D-205ENST00000473099 CDC42EP4Q9H3Q1 356 aaKnown RBP13.11□□□□□ -0.31
VPS13D-205ENST00000473099 NOL6Q9H6R4 1146 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms