RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PADI4Q9UM07 663 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 PSMD13Q9UNM6 376 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 COL1A2P08123 1366 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 XIRP2A4UGR9 3374 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 FNDC1Q4ZHG4 1894 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ARHGAP10A1A4S6 786 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 FAM159BA6NKW6 160 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SIN3BO75182 1162 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 GSRP00390 522 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CD48P09326 243 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CPA3P15088 417 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ACOT2P49753 483 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 MTTPP55157 894 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ACTR2P61160 394 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 YWHAEP62258 255 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 HPCAP84074 193 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SULT2A1Q06520 285 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 HYAL1Q12794 435 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 TFDP2Q14188 446 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 BTG3Q14201 252 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 RALGPS1Q5JS13 557 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 TEDDM1Q5T9Z0 273 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 MBLAC2Q68D91 279 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 FBXL19Q6PCT2 694 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DARS2Q6PI48 645 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 C4orf22Q6V702 233 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 TMC7Q7Z402 723 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ADHFE1Q8IWW8 467 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 NDUFAF2Q8N183 169 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SLC4A11Q8NBS3 891 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DDI1Q8WTU0 396 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 FAF2Q96CS3 445 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SLC13A1Q9BZW2 595 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SMYD3Q9H7B4 428 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 PLAC1Q9HBJ0 212 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 USP29Q9HBJ7 922 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DMTF1Q9Y222 760 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DTNAQ9Y4J8 743 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 PLXNA4Q9HCM2 1894 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 HMX2A2RU54 273 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 MEI4A8MW99 385 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 H3BQ06 376 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 M0QZ92 97 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 OR6B1O95007 311 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 PROCP04070 461 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CAPNS1P04632 268 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ITGAXP20702 1163 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 GRK2P25098 689 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CD52P31358 61 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ALDH1A3P47895 512 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 STAT5BP51692 787 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DEUP1Q05D60 604 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 MTM1Q13496 603 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CYLC2Q14093 348 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SMAD2Q15796 467 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 LRRC36Q1X8D7 754 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SMTNL2Q2TAL5 461 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 FASTKD1Q53R41 847 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 RBM44Q6ZP01 1051 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 RTN4RL1Q86UN2 441 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CAND1Q86VP6 1230 aaKnown RBP9.81□□□□□ -0.84
HDAC3-205ENST00000469550 KIAA0319LQ8IZA0 1049 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ADGRF2Q8IZF7 708 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CFAP36Q96G28 342 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 ZNF778Q96MU6 729 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 SMYD2Q9NRG4 433 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 CLDND1Q9NY35 253 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 DNAJC16Q9Y2G8 782 aa9.81□□□□□ -0.84
HDAC3-205ENST00000469550 WDR81Q562E7 1941 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 CCDC195A0A1B0GUA6 201 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 FAM86C2PA6NEL3 165 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 DCXO43602 365 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 DNAJA2O60884 412 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 TNFAIP8O95379 198 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 TRUB2O95900 331 aaKnown RBP9.8□□□□□ -0.84
HDAC3-205ENST00000469550 SERPINE1P05121 402 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 STAG3L1P0CL83 205 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 FGF3P11487 239 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-205ENST00000469550 DESP17661 470 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 SERPINB6P35237 376 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 MAGEA3P43357 314 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 SLC1A6P48664 564 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 HSPA13P48723 471 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 IDH3AP50213 366 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 ERFP50548 548 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 EPHB1P54762 984 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 SMAD4Q13485 552 aaKnown RBP9.8□□□□□ -0.84
HDAC3-205ENST00000469550 CAMK1Q14012 370 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 TLR1Q15399 786 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 KCNT1Q5JUK3 1230 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 METTL21CQ5VZV1 264 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 KLHDC10Q6PID8 442 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 PQLC1Q8N2U9 271 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 LRRC43Q8N309 656 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 TAB3Q8N5C8 712 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-205ENST00000469550 OR5B17Q8NGF7 314 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 JOSD2Q8TAC2 188 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 PPP1R14CQ8TAE6 165 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 GSDMBQ8TAX9 411 aa9.8□□□□□ -0.84
HDAC3-205ENST00000469550 PLEKHG4BQ96PX9 1271 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms