RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GBP4Q96PP9 640 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 PSMB7Q99436 277 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 RAB6CQ9H0N0 254 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 ADAMTS1Q9UHI8 967 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 SNX11Q9Y5W9 270 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 FRYQ5TBA9 3013 aa21.34■■□□□ 1.01
SDC1-205ENST00000447124 KMT2BQ9UMN6 2715 aaPredicted RBP21.34■■□□□ 1.01
SDC1-205ENST00000447124 ATP9BO43861 1147 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 RNASEH2AO75792 299 aaKnown RBP21.33■■□□□ 1.01
SDC1-205ENST00000447124 KRT37O76014 449 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 ZNF18P17022 549 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 SOX5P35711 763 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 NNMTP40261 264 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 AFF3P51826 1226 aaKnown RBP21.33■■□□□ 1.01
SDC1-205ENST00000447124 CDR2Q01850 454 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 NCAPHQ15003 741 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 DBX2Q6ZNG2 339 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 PHLDB2Q86SQ0 1253 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 C1orf74Q96LT6 269 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 CFAP57Q96MR6 1250 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 PCDHB18PQ96TA0 734 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 OMDQ99983 421 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 SCNM1Q9BWG6 230 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 HSD3B7Q9H2F3 369 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 LIMA1Q9UHB6 759 aaKnown RBP21.33■■□□□ 1.01
SDC1-205ENST00000447124 SARDHQ9UL12 918 aa21.33■■□□□ 1.01
SDC1-205ENST00000447124 LRRC10BA6NIK2 292 aa21.32■■□□□ 1
SDC1-205ENST00000447124 PLK4O00444 970 aa21.32■■□□□ 1
SDC1-205ENST00000447124 HYAL3O43820 417 aaPredicted RBP21.32■■□□□ 1
SDC1-205ENST00000447124 CBFA2T3O75081 653 aa21.32■■□□□ 1
SDC1-205ENST00000447124 MT-CO1P00395 513 aa21.32■■□□□ 1
SDC1-205ENST00000447124 GOT1P17174 413 aa21.32■■□□□ 1
SDC1-205ENST00000447124 C5AR1P21730 350 aa21.32■■□□□ 1
SDC1-205ENST00000447124 DRD3P35462 400 aa21.32■■□□□ 1
SDC1-205ENST00000447124 ELAVL3Q14576 367 aaKnown RBP21.32■■□□□ 1
SDC1-205ENST00000447124 TRIP6Q15654 476 aaKnown RBP21.32■■□□□ 1
SDC1-205ENST00000447124 DLG2Q15700 870 aa21.32■■□□□ 1
SDC1-205ENST00000447124 ST3GAL2Q16842 350 aa21.32■■□□□ 1
SDC1-205ENST00000447124 SASS6Q6UVJ0 657 aa21.32■■□□□ 1
SDC1-205ENST00000447124 IL27RAQ6UWB1 636 aa21.32■■□□□ 1
SDC1-205ENST00000447124 ZNF677Q86XU0 584 aa21.32■■□□□ 1
SDC1-205ENST00000447124 NAXDQ8IW45 347 aa21.32■■□□□ 1
SDC1-205ENST00000447124 EMC1Q8N766 993 aa21.32■■□□□ 1
SDC1-205ENST00000447124 PPP1R9BQ96SB3 815 aa21.32■■□□□ 1
SDC1-205ENST00000447124 TMEM121BQ9BXQ6 578 aaPredicted RBP21.32■■□□□ 1
SDC1-205ENST00000447124 TM7SF3Q9NS93 570 aa21.32■■□□□ 1
SDC1-205ENST00000447124 ANO10Q9NW15 660 aa21.32■■□□□ 1
SDC1-205ENST00000447124 MPP6Q9NZW5 540 aa21.32■■□□□ 1
SDC1-205ENST00000447124 FZD4Q9ULV1 537 aa21.32■■□□□ 1
SDC1-205ENST00000447124 ANKRD6Q9Y2G4 727 aa21.32■■□□□ 1
SDC1-205ENST00000447124 USP24Q9UPU5 2620 aa21.32■■□□□ 1
SDC1-205ENST00000447124 A0A1W2PPC4 97 aa21.31■■□□□ 1
SDC1-205ENST00000447124 C1QTNF9BB2RNN3 333 aa21.31■■□□□ 1
SDC1-205ENST00000447124 WNT9AO14904 365 aa21.31■■□□□ 1
SDC1-205ENST00000447124 SNAP91O60641 907 aa21.31■■□□□ 1
SDC1-205ENST00000447124 ENDOD1O94919 500 aa21.31■■□□□ 1
SDC1-205ENST00000447124 IL1BP01584 269 aa21.31■■□□□ 1
SDC1-205ENST00000447124 C1QTNF9P0C862 333 aa21.31■■□□□ 1
SDC1-205ENST00000447124 ZNF883P0CG24 379 aa21.31■■□□□ 1
SDC1-205ENST00000447124 MMP8P22894 467 aa21.31■■□□□ 1
SDC1-205ENST00000447124 SFSWAPQ12872 951 aaKnown RBP21.31■■□□□ 1
SDC1-205ENST00000447124 SYCP1Q15431 976 aa21.31■■□□□ 1
SDC1-205ENST00000447124 ACCSLQ4AC99 568 aa21.31■■□□□ 1
SDC1-205ENST00000447124 FKBP15Q5T1M5 1219 aa21.31■■□□□ 1
SDC1-205ENST00000447124 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.31■■□□□ 1
SDC1-205ENST00000447124 SND1Q7KZF4 910 aaKnown RBP eCLIP21.31■■□□□ 17e-8■■□□□ 13.9
SDC1-205ENST00000447124 ARCQ7LC44 396 aa21.31■■□□□ 1
SDC1-205ENST00000447124 APTXQ7Z2E3 356 aaKnown RBP21.31■■□□□ 1
SDC1-205ENST00000447124 OR2T34Q8NGX1 318 aa21.31■■□□□ 1
SDC1-205ENST00000447124 SLC30A5Q8TAD4 765 aa21.31■■□□□ 1
SDC1-205ENST00000447124 ZNF212Q9UDV6 495 aa21.31■■□□□ 1
SDC1-205ENST00000447124 VPS28Q9UK41 221 aa21.31■■□□□ 1
SDC1-205ENST00000447124 IGLV3-10A0A075B6K4 115 aa21.3■■□□□ 1
SDC1-205ENST00000447124 A0A0D9SEW6 157 aa21.3■■□□□ 1
SDC1-205ENST00000447124 GJB6O95452 261 aa21.3■■□□□ 1
SDC1-205ENST00000447124 CER1O95813 267 aa21.3■■□□□ 1
SDC1-205ENST00000447124 ADH1BP00325 375 aa21.3■■□□□ 1
SDC1-205ENST00000447124 WNT1P04628 370 aa21.3■■□□□ 1
SDC1-205ENST00000447124 UNGP13051 313 aaPredicted RBP21.3■■□□□ 1
SDC1-205ENST00000447124 GRIA4P48058 902 aa21.3■■□□□ 1
SDC1-205ENST00000447124 PTP4A2Q12974 167 aa21.3■■□□□ 1
SDC1-205ENST00000447124 HNRNPDQ14103 355 aaKnown RBP21.3■■□□□ 1
SDC1-205ENST00000447124 CHCHD4Q8N4Q1 142 aa21.3■■□□□ 1
SDC1-205ENST00000447124 SH2D3CQ8N5H7 860 aa21.3■■□□□ 1
SDC1-205ENST00000447124 OR14C36Q8NHC7 312 aa21.3■■□□□ 1
SDC1-205ENST00000447124 FAM131CQ96AQ9 280 aa21.3■■□□□ 1
SDC1-205ENST00000447124 SLC6A18Q96N87 628 aa21.3■■□□□ 1
SDC1-205ENST00000447124 SPAG5Q96R06 1193 aa21.3■■□□□ 1
SDC1-205ENST00000447124 HAPLN3Q96S86 360 aa21.3■■□□□ 1
SDC1-205ENST00000447124 METTL5Q9NRN9 209 aaKnown RBP21.3■■□□□ 1
SDC1-205ENST00000447124 SLC25A13Q9UJS0 675 aa21.3■■□□□ 1
SDC1-205ENST00000447124 PCOLCE2Q9UKZ9 415 aa21.3■■□□□ 1
SDC1-205ENST00000447124 PPM1HQ9ULR3 514 aa21.3■■□□□ 1
SDC1-205ENST00000447124 LRRC72A6NJI9 287 aa21.29■■□□□ 1
SDC1-205ENST00000447124 LGALS16A8MUM7 142 aa21.29■■□□□ 1
SDC1-205ENST00000447124 E9PAM4 449 aa21.29■■□□□ 1
SDC1-205ENST00000447124 K7ERQ8 282 aa21.29■■□□□ 1
SDC1-205ENST00000447124 MCF2LO15068 1137 aa21.29■■□□□ 1
SDC1-205ENST00000447124 RHOCP08134 193 aa21.29■■□□□ 1
SDC1-205ENST00000447124 SRCP12931 536 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms