RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	FAM209B	Q5JX69	171 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	C8orf82	Q6P1X6	216 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	TMEM71	Q6P5X7	295 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	CAMK1D	Q8IU85	385 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM185A	Q8N0U4	392 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	TMEM217	Q8N7C4	229 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM110D	Q8TAY7	271 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	CLEC4C	Q8WTT0	213 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	NAA15	Q9BXJ9	866 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	CATSPERB	Q9H7T0	1116 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	DDX31	Q9H8H2	851 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	LINC01565	O15544	149 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	STAT1	P42224	750 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	DLX5	P56178	289 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	RBM6	P78332	1123 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	POU5F1B	Q06416	359 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	PLK5	Q496M5	336 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	ARL13A	Q5H913	290 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	VWA5B1	Q5TIE3	1220 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	ARL6IP4	Q66PJ3	421 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	KLB	Q86Z14	1044 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	NEXN-AS1	Q8NBZ9	246 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	CMAS	Q8NFW8	434 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	REXO5	Q96IC2	774 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	APOLD1	Q96LR9	279 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	SORBS1	Q9BX66	1292 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	KLHL31	Q9H511	634 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	TM7SF3	Q9NS93	570 aa		4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	TRPC5	Q9UL62	973 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	COPG1	Q9Y678	874 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-205	ENST00000433888	STMND1	H3BQB6	276 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	VWA5A	O00534	786 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	HNRNPDL	O14979	420 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	KIF3B	O15066	747 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	SLC16A5	O15375	505 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	LIAS	O43766	372 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	SOX30	O94993	753 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	TNFSF4	P23510	183 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	ITGB8	P26012	769 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	KLRK1	P26718	216 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	IFIT5	Q13325	482 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF718	Q3SXZ3	478 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	IGFN1	Q86VF2	1251 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	CCDC25	Q86WR0	208 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF566	Q969W8	418 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	RTP4	Q96DX8	246 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	NPAS1	Q99742	590 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	MECR	Q9BV79	373 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	IL25	Q9H293	177 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZDHHC7	Q9NXF8	308 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	PKP3	Q9Y446	797 aa		4.1	□□□□□ -1.75
PTPN4-205	ENST00000433888	DENND3	A2RUS2	1198 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	LDB2	O43679	373 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	UMOD	P07911	640 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	KLRC2	P26717	231 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	PPP3CC	P48454	512 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	GRSF1	Q12849	480 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	ILF3	Q12906	894 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	TRAF2	Q12933	501 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF284	Q2VY69	593 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF672	Q499Z4	452 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	COBLL1	Q53SF7	1204 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	FBXO38	Q6PIJ6	1188 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	CREB3L2	Q70SY1	520 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	DPP9	Q86TI2	863 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	TMEM200A	Q86VY9	491 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	FOXP4	Q8IVH2	680 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	WDR75	Q8IWA0	830 aa	Known RBP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	MUC20	Q8N307	709 aa	Predicted RBP	4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	SARG	Q9BW04	601 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	CCDC134	Q9H6E4	229 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM50B	Q9Y247	325 aa		4.09	□□□□□ -1.75
PTPN4-205	ENST00000433888	TCRBV7S3A2	A0A539	114 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	KIF28P	B7ZC32	967 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	NPPB	P16860	134 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	TCEA1	P23193	301 aa	Known RBP	4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	AMT	P48728	403 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	KIF19	Q2TAC6	998 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	H1FNT	Q75WM6	255 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	LRRC57	Q8N9N7	239 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	FAM216A	Q8WUB2	273 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	WDR60	Q8WVS4	1066 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	C18orf8	Q96DM3	657 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	PKP4	Q99569	1192 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	HIPK3	Q9H422	1215 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	ACTR5	Q9H9F9	607 aa	Predicted RBP	4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	IGSF9	Q9P2J2	1179 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	IL36RN	Q9UBH0	155 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	NFU1	Q9UMS0	254 aa		4.08	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3D	A0A087WVF3	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3I	A0A087WXS9	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3E	A0A087X179	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3K	A0A087X1G2	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3B	A6NDS4	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	SLC38A8	A6NNN8	435 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	TBC1D3L	B9A6J9	549 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	APAF1	O14727	1248 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	PMM2	O15305	246 aa		4.07	□□□□□ -1.76
PTPN4-205	ENST00000433888	PLA2G6	O60733	806 aa		4.07	□□□□□ -1.76

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