RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SERAC1Q96JX3 654 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 SIGLEC10Q96LC7 697 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 TMEM237Q96Q45 408 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 TMEM175Q9BSA9 504 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 NAT9Q9BTE0 207 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 TRIM55Q9BYV6 548 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 IQCGQ9H095 443 aaKnown RBP15.19■□□□□ 0.02
USP4-203ENST00000415188 MYLK2Q9H1R3 596 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 LRMDAQ9H2I8 198 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 LRRC4Q9HBW1 653 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 SAR1AQ9NR31 198 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 ARHGEF4Q9NR80 690 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 MARCH5Q9NX47 278 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 RRN3Q9NYV6 651 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 CHKBQ9Y259 395 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 IRAK3Q9Y616 596 aa15.19■□□□□ 0.02
USP4-203ENST00000415188 TECTAO75443 2155 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 CARNS1A5YM72 827 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 F8W810 466 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 INPPL1O15357 1258 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 WFS1O76024 890 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 METTL18O95568 372 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 LHX1P48742 406 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 ADIGQ0VDE8 80 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 PAFAH1B3Q15102 231 aaKnown RBP15.18■□□□□ 0.02
USP4-203ENST00000415188 RARS2Q5T160 578 aaKnown RBP15.18■□□□□ 0.02
USP4-203ENST00000415188 FAXCQ5TGI0 409 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 TIFABQ6ZNK6 161 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 ZNF534Q76KX8 674 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 CTAGE3PQ8IX95 158 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 COLGALT2Q8IYK4 626 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 RNF139Q8WU17 664 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 SLC22A17Q8WUG5 538 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 ERP27Q96DN0 273 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 LPIN3Q9BQK8 851 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 TACO1Q9BSH4 297 aaKnown RBP15.18■□□□□ 0.02
USP4-203ENST00000415188 TSSK1BQ9BXA7 367 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 ADAM33Q9BZ11 813 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 POMKQ9H5K3 350 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 NOD2Q9HC29 1040 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 SLC17A7Q9P2U7 560 aa15.18■□□□□ 0.02
USP4-203ENST00000415188 PTGESO14684 152 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 HCRTO43612 131 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 AVILO75366 819 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 FAM200BP0CF97 657 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 PYGBP11216 843 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 GOT1P17174 413 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 AMPD1P23109 780 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 PAX3P23760 479 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 OR1G1P47890 313 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 SERPINB4P48594 390 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 HCAR3P49019 387 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 KCNJ2P63252 427 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 ZXDAP98168 799 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 CDK18Q07002 472 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 DSC1Q08554 894 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 SCAPQ12770 1279 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 ANKRD20A2Q5SQ80 823 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 ANKRD20A1Q5TYW2 823 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 ANKRD20A3Q5VUR7 823 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 LRRC8BQ6P9F7 803 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 NLRP9Q7RTR0 991 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 TAS1R1Q7RTX1 841 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 PRPF39Q86UA1 669 aaKnown RBP15.17■□□□□ 0.02
USP4-203ENST00000415188 ACMSDQ8TDX5 336 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 FAM149B1Q96BN6 582 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 STAMBPL1Q96FJ0 436 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 SRPK1Q96SB4 655 aaKnown RBP15.17■□□□□ 0.02
USP4-203ENST00000415188 BRD8Q9H0E9 1235 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 GGT7Q9UJ14 662 aa15.17■□□□□ 0.02
USP4-203ENST00000415188 RPL26L1Q9UNX3 145 aaKnown RBP15.17■□□□□ 0.02
USP4-203ENST00000415188 MTO1Q9Y2Z2 717 aaKnown RBP15.17■□□□□ 0.02
USP4-203ENST00000415188 GOLGA8RI6L899 631 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 TRAFD1O14545 582 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 LILRB3O75022 631 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 ALDH1A2O94788 518 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 CNPP09543 421 aaKnown RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 VAV1P15498 845 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 GTF2A1P52655 376 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 ATXN1P54253 815 aaKnown RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 DEUP1Q05D60 604 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 PREPLQ4J6C6 727 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 INTS6LQ5JSJ4 861 aaKnown RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 STXBP5Q5T5C0 1151 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 OTUD1Q5VV17 481 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 CES5AQ6NT32 575 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 CLEC20AQ6ZU45 233 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 MARK2Q7KZI7 788 aaKnown RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 CCDC91Q7Z6B0 441 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 FAM131BQ86XD5 332 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 GSTCDQ8NEC7 633 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 TTC17Q96AE7 1141 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 PGAP3Q96FM1 320 aaPredicted RBP15.16■□□□□ 0.02
USP4-203ENST00000415188 KLHL5Q96PQ7 755 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 MED10Q9BTT4 135 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 PLAC1Q9HBJ0 212 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 CNGB3Q9NQW8 809 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 MOCS1Q9NZB8 636 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 IGSF9Q9P2J2 1179 aa15.16■□□□□ 0.02
USP4-203ENST00000415188 GIT1Q9Y2X7 761 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms