RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CDK5RAP1Q96SZ6 601 aaKnown RBP13.88□□□□□ -0.19
LIMS1-205ENST00000410093 TMEM175Q9BSA9 504 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 TRPV6Q9H1D0 765 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 ANLNQ9NQW6 1124 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 SAR1AQ9NR31 198 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 TMPRSS4Q9NRS4 437 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 ABCF3Q9NUQ8 709 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 ZFATQ9P243 1243 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 PCDHB7Q9Y5E2 793 aa13.88□□□□□ -0.19
LIMS1-205ENST00000410093 KCNU1A8MYU2 1149 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 I6L893 689 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 PITPNM1O00562 1244 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 DDHD2O94830 711 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 UBOX5O94941 541 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 CSH1P0DML2 217 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 CSH2P0DML3 217 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SPRP35270 261 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 OR1G1P47890 313 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 CSE1LP55060 971 aaKnown RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SESN2P58004 480 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 RIPK1Q13546 671 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 MRPL58Q14197 206 aaKnown RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SLC39A12Q504Y0 691 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 PACS1Q6VY07 963 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 OTOAQ7RTW8 1153 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 MPP5Q8N3R9 675 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 ATPAF2Q8N5M1 289 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 NPWQ8N729 165 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 GABPB2Q8TAK5 448 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SPPL2BQ8TCT7 592 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 C10orf82Q8WW14 230 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 ISL2Q96A47 359 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SPATA17Q96L03 361 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 FAM111AQ96PZ2 611 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 RAB3IPQ96QF0 476 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 FCRL5Q96RD9 977 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 FAM96AQ9H5X1 160 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SLC40A1Q9NP59 571 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SMYD2Q9NRG4 433 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 KLC4Q9NSK0 619 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SIRPGQ9P1W8 387 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 PPARGC1AQ9UBK2 798 aaKnown RBP13.87□□□□□ -0.19
LIMS1-205ENST00000410093 RPS6KL1Q9Y6S9 549 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 SHROOM3Q8TF72 1996 aa13.87□□□□□ -0.19
LIMS1-205ENST00000410093 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 TRIM43BA6NCK2 446 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 GOLGA8RI6L899 631 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 KCNK1O00180 336 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 KIAA0355O15063 1070 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 MATN3O15232 486 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 ZBTB24O43167 697 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 TIMM44O43615 452 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 PAGE1O75459 146 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 ALDH2P05091 517 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 CDK7P50613 346 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 NDST2P52849 883 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 GEMP55040 296 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 MLLT6P55198 1093 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 MTM1Q13496 603 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 LRIT3Q3SXY7 679 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 AFMIDQ63HM1 303 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 TRMT10BQ6PF06 316 aaKnown RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 FITM2Q8N6M3 262 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 DNAAF3Q8N9W5 541 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 MAGEC3Q8TD91 643 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 HASPINQ8TF76 798 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 SEPT8Q92599 483 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 INPP5DQ92835 1189 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 TRIM43Q96BQ3 446 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 IL12RB2Q99665 862 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 RHOBTB2Q9BYZ6 727 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 ECT2Q9H8V3 914 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 MRM3Q9HC36 420 aaKnown RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 ENTPD7Q9NQZ7 604 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 SLC17A7Q9P2U7 560 aa13.86□□□□□ -0.19
LIMS1-205ENST00000410093 RANBP2P49792 3224 aaKnown RBP13.86□□□□□ -0.19
LIMS1-205ENST00000410093 UNC5CO95185 931 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 MPOP05164 745 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 ITGB1P05556 798 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 GRIA1P42261 906 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 PLEKHG4Q58EX7 1191 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 VARS2Q5ST30 1063 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 RWDD4Q6NW29 188 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SCD5Q86SK9 330 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 PACS2Q86VP3 889 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 ZNF280BQ86YH2 543 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SUGP1Q8IWZ8 645 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 NDUFAF2Q8N183 169 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 RTL3Q8N8U3 475 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 ATP6V0D2Q8N8Y2 350 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SCAMP5Q8TAC9 235 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SREK1Q8WXA9 508 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 LINC01599Q8WXQ3 324 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SLC39A13Q96H72 371 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 FCRL2Q96LA5 508 aaPredicted RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 TMEM209Q96SK2 561 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 STN1Q9H668 368 aaKnown RBP13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SLCO1B3Q9NPD5 702 aa13.85□□□□□ -0.19
LIMS1-205ENST00000410093 SYBUQ9NX95 663 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms