RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LIMA1Q9UHB6 759 aaKnown RBP4.34□□□□□ -1.71
HMGB1-204ENST00000399489 CTNNA3Q9UI47 895 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 KLHL20Q9Y2M5 609 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 POMT1Q9Y6A1 747 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 KCNE2Q9Y6J6 123 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 AP1M2Q9Y6Q5 423 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 RUSC2Q8N2Y8 1516 aa4.34□□□□□ -1.71
HMGB1-204ENST00000399489 TRAV34A0A0B4J273 112 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 LOC102723971A0A1B0GUV8 181 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 GAGE12BA1L429 117 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 GAGE12HA6NDE8 117 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM232C9JQI7 657 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SCAMP1O15126 338 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 GRM6O15303 877 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 PROM1O43490 865 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 PRAMEF4O60810 478 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 COQ9O75208 318 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RPP40O75818 363 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 VIPP01282 170 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 HLA-DOAP06340 250 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 TPOP07202 933 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SPARCP09486 303 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SNRPA1P09661 255 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 CCDC159P0C7I6 412 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RARGP13631 454 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 MGAT1P26572 445 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 HSPA4P34932 840 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 ADRA1BP35368 520 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 PRPHP41219 470 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 CDK7P50613 346 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SLC26A5P58743 744 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 HTD2P86397 168 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 TMED1Q13445 227 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 KCNAB1Q14722 419 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SMU1Q2TAY7 513 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 KBTBD12Q3ZCT8 623 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 C9orf152Q5JTZ5 239 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 KLHL10Q6JEL2 608 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 NCEH1Q6PIU2 408 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 MON1AQ86VX9 555 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RNF168Q8IYW5 571 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SPATA20Q8TB22 786 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 ZCCHC10Q8TBK6 192 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 ELP4Q96EB1 424 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RBM17Q96I25 401 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 LENG8Q96PV6 779 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RAB3IPQ96QF0 476 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 GCNAQ96QF7 691 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 PAIP2Q9BPZ3 127 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 LBHD1Q9BQE6 289 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 CPEB1Q9BZB8 566 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 INTS2Q9H0H0 1204 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 STN1Q9H668 368 aaKnown RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 LDAHQ9H6V9 325 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 ZBTB26Q9HCK0 441 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 LANCL2Q9NS86 450 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 SIRT3Q9NTG7 399 aaPredicted RBP4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RAI14Q9P0K7 980 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 GDAQ9Y2T3 454 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 TRPV2Q9Y5S1 764 aa4.33□□□□□ -1.72
HMGB1-204ENST00000399489 RGSL1A5PLK6 1076 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ZAR1LA6NP61 321 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 EFCAB8A8MWE9 144 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 MYO1GB0I1T2 1018 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 H7C4K7 107 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 K7EPI3 171 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PGRMC2O15173 223 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SNX4O95219 450 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 KIF20AO95235 890 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 OR2C1O95371 312 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GRPP07492 148 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SUPT20HL2P0C7V6 817 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 FPR1P21462 350 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 BMPR1AP36894 532 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 LMAN1P49257 510 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 POLGP54098 1239 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PER3P56645 1201 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TBL3Q12788 808 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 AIMP2Q13155 320 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 RABEP1Q15276 862 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 NPY5RQ15761 445 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 NTRK2Q16620 822 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SUPT20HL1Q3ZLR7 823 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 KRT80Q6KB66 452 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 C16orf87Q6PH81 154 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CHST3Q7LGC8 479 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GDF7Q7Z4P5 450 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 DNAAF5Q86Y56 855 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PLXDC1Q8IUK5 500 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ANKRD20A12PQ8NF67 263 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 OR7D4Q8NG98 312 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CEP76Q8TAP6 659 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SMCR8Q8TEV9 937 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ZNF480Q8WV37 535 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SNX33Q8WV41 574 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PRPF31Q8WWY3 499 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 RAPGEF4Q8WZA2 1011 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 SHC3Q92529 594 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GRAMD1AQ96CP6 724 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CRACR2AQ9BSW2 395 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms