RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 KANSL3Q9P2N6 904 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PRR12Q9ULL5 1215 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 RABL2BQ9UNT1 228 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DAGLAQ9Y4D2 1042 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CASZ1Q86V15 1759 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 EXTL3O43909 919 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 NRP2O60462 931 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 PLIN3O60664 434 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 DBTP11182 482 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TSHRP16473 764 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 KRT6CP48668 564 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ST13P50502 369 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 PPP4CP60510 307 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 NSUN2Q08J23 767 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ZFP69Q49AA0 526 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 CLIP4Q8N3C7 705 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SLC15A4Q8N697 577 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 OR52B2Q96RD2 323 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 RMDN3Q96TC7 470 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 EBNA1BP2Q99848 306 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 KCTD14Q9BQ13 255 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SLC25A23Q9BV35 468 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ROGDIQ9GZN7 287 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 DHX33Q9H6R0 707 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 CAB39LQ9H9S4 337 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 VTA1Q9NP79 307 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 CISHQ9NSE2 258 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 DNAJC28Q9NX36 388 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 FBXO9Q9UK97 447 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 FAM32AQ9Y421 112 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF335Q9H4Z2 1342 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 LOC100506127A0A0U1RQW1 187 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 H2AFYO75367 372 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TNFRSF21O75509 655 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 RPL10P27635 214 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 CDKN2BP42772 138 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 HNRNPDQ14103 355 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 MGAT5BQ3V5L5 792 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SPANXN2Q5MJ10 180 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TRAPPC3LQ5T215 181 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TXNRD3NBQ6F5E7 133 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 DNAJB14Q8TBM8 379 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TFB1MQ8WVM0 346 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 RXFP2Q8WXD0 754 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 PROX1Q92786 737 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 DHRS1Q96LJ7 313 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 EPB41L1Q9H4G0 881 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 VTI1BQ9UEU0 232 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF221Q9UK13 617 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 PCDHGC3Q9UN70 934 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ACOT9Q9Y305 439 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 BTBD19C9JJ37 291 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 KLF11O14901 512 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TBX1O43435 398 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TIMM44O43615 452 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 HS6ST1O60243 411 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 CD48P09326 243 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 RARRES1P49788 294 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 JAK3P52333 1124 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 YWHAZP63104 245 aaKnown RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TUBA4AP68366 448 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 GSTM4Q03013 218 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TNFAIP2Q03169 654 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 IKBKEQ14164 716 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 BOLA3Q53S33 107 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SLC22A16Q86VW1 577 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SLC9A9Q8IVB4 645 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SPATA6LQ8N4H0 392 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 COLGALT1Q8NBJ5 622 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF512Q96ME7 567 aaPredicted RBP9.47□□□□□ -0.89
COL28A1-201ENST00000399429 NLRP4Q96MN2 994 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 NIF3L1Q9GZT8 377 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TOR3AQ9H497 397 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 RERGLQ9H628 205 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TBC1D14Q9P2M4 693 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 SLC17A6Q9P2U8 582 aa9.47□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM221A6NGB7 291 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 H0Y858 1186 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 BUD23O43709 281 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 RNASEH2AO75792 299 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SNRPB2P08579 225 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 HNRNPLP14866 589 aaKnown RBP eCLIP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 CD151P48509 253 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 BMXP51813 675 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 CDKL1Q00532 357 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 NFIL3Q16649 462 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 TIGD2Q4W5G0 525 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 LRRC38Q5VT99 294 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 C14orf80Q86SX3 495 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 ZDHHC13Q8IUH4 622 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 KCTD17Q8N5Z5 321 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 LRRC39Q96DD0 335 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 ZHX1-C8orf76Q96EF9 292 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 SNX27Q96L92 541 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 KLHL32Q96NJ5 620 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 C17orf80Q9BSJ5 609 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 ACE2Q9BYF1 805 aaPredicted RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 MTMR12Q9C0I1 747 aa9.46□□□□□ -0.89
COL28A1-201ENST00000399429 RPF1Q9H9Y2 349 aaKnown RBP9.46□□□□□ -0.89
COL28A1-201ENST00000399429 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms