RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NEMP1O14524 444 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ZBTB7AO95365 584 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 PGM3O95394 542 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 AMHP03971 560 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 EPHA3P29320 983 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ACADSBP45954 432 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 RPS6KA3P51812 740 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ADIGQ0VDE8 80 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DYNC1I2Q13409 638 aaKnown RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DPYSQ14117 519 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 KIZQ2M2Z5 673 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 LSM12Q3MHD2 195 aaKnown RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 MARCH8Q5T0T0 291 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 CERCAMQ5T4B2 595 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 SYPL2Q5VXT5 272 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ISLR2Q6UXK2 745 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 PRRT2Q7Z6L0 340 aaPredicted RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 SDCCAG8Q86SQ7 713 aaPredicted RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 PIGZQ86VD9 579 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 SNX32Q86XE0 403 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 TMEM151AQ8N4L1 468 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 NAT14Q8WUY8 206 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 FERMT1Q9BQL6 677 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 OXSMQ9NWU1 459 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 UBAP1Q9NZ09 502 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 GPRC5DQ9NZD1 345 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 PPP1R1BQ9UD71 204 aaPredicted RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DERAQ9Y315 318 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 COMMD3-BMI1R4GMX3 469 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 C15orf38-AP3S2A0A0A6YYH1 394 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 GOLGA8TH3BQL2 631 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DCLK1O15075 740 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 AP1G1O43747 822 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 AP2A1O95782 977 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 MPOP05164 745 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 SBK3P0C264 359 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 THRAP10827 490 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 NDUFV1P49821 464 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 TMEM62Q0P6H9 643 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 NME3Q13232 169 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 LSAMPQ13449 338 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 BNIPLQ7Z465 357 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ARPINQ7Z6K5 226 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DSELQ8IZU8 1212 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DNAAF3Q8N9W5 541 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 RNF169Q8NCN4 708 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 BEST2Q8NFU1 509 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ADAM32Q8TC27 787 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 NT5C3BQ969T7 300 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 DCUN1D1Q96GG9 259 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 CDRT15Q96T59 188 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 C16orf70Q9BSU1 422 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 MCMBPQ9BTE3 642 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ILKAPQ9H0C8 392 aaPredicted RBP12.96□□□□□ -0.33
SHMT1-205ENST00000395684 ELP3Q9H9T3 547 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 CHRAC1Q9NRG0 131 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 BFARQ9NZS9 450 aa12.96□□□□□ -0.33
SHMT1-205ENST00000395684 RGSL1A5PLK6 1076 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 KPNA7A9QM74 516 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 M0QYT0 321 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 TK2O00142 265 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 ZBTB24O43167 697 aaPredicted RBP12.96□□□□□ -0.34
SHMT1-205ENST00000395684 ATP9BO43861 1147 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 DNAJA2O60884 412 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 BEST1O76090 585 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 SPATA31D3P0C874 917 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 SMIM18P0DKX4 95 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 XRCC1P18887 633 aaPredicted RBP12.96□□□□□ -0.34
SHMT1-205ENST00000395684 THOP1P52888 689 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 RPL26P61254 145 aaKnown RBP12.96□□□□□ -0.34
SHMT1-205ENST00000395684 LAMC2Q13753 1193 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 R3HDM1Q15032 1099 aaKnown RBP12.96□□□□□ -0.34
SHMT1-205ENST00000395684 MAMDC4Q6UXC1 1216 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 SPATA31D4Q6ZUB0 917 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 KYQ8NBH2 561 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 SLC7A14Q8TBB6 771 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 CNDP1Q96KN2 507 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 NPY6RQ99463 290 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 NDNQ99608 321 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 APOL2Q9BQE5 337 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 VCX3AQ9NNX9 186 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 CASS4Q9NQ75 786 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 ANLNQ9NQW6 1124 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 PIGVQ9NUD9 493 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 C6orf203Q9P0P8 240 aaPredicted RBP12.96□□□□□ -0.34
SHMT1-205ENST00000395684 CSADQ9Y600 493 aa12.96□□□□□ -0.34
SHMT1-205ENST00000395684 PLXNA1Q9UIW2 1896 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ZNF638Q14966 1978 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 I6L893 689 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 EEF2KO00418 725 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 DENRO43583 198 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 AKAP5P24588 427 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 CD68P34810 354 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 MS4A2Q01362 244 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ZNF423Q2M1K9 1284 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 DCAF4L1Q3SXM0 396 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 FBXO47Q5MNV8 452 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 TMEM198Q66K66 360 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 KCTD11Q693B1 232 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 TAPT1Q6NXT6 567 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms