RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RWDD2BP57060 319 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 GEMIN4P57678 1058 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TRIM68Q6AZZ1 485 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 YAF2Q8IY57 180 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CBARPQ8N350 705 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 DTX3LQ8TDB6 740 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CSGALNACT1Q8TDX6 532 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 LRIG1Q96JA1 1093 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 HERPUD2Q9BSE4 406 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 FAM126AQ9BYI3 521 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 PCED1AQ9H1Q7 454 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 EBF3Q9H4W6 596 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 BRD9Q9H8M2 597 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 MRPS17Q9Y2R5 130 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 PRRT4C9JH25 899 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 K7ESF4 209 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 EEF2KO00418 725 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TBL1XO60907 577 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 GOT1P17174 413 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ERCC2P18074 760 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TARSP26639 723 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 DGKGP49619 791 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ATP11AP98196 1134 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 GNA12Q03113 381 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SLC10A2Q12908 348 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 NME3Q13232 169 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 OASLQ15646 514 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 C2orf27AQ580R0 203 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SH2D3CQ8N5H7 860 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 FAM3CQ92520 227 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ECHDC3Q96DC8 303 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 MGME1Q9BQP7 344 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 COL25A1Q9BXS0 654 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 MAGEB5Q9BZ81 275 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ATP13A1Q9HD20 1204 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 NDFIP2Q9NV92 336 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 MUTYHQ9UIF7 546 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TPX2Q9ULW0 747 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 MMP17Q9ULZ9 603 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SHROOM3Q8TF72 1996 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 LRP4O75096 1905 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 A0A1W2PQF6 199 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CFAP69A5D8W1 941 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 USP27XA6NNY8 438 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ASGR2P07307 311 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CD48P09326 243 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CD70P32970 193 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SLC6A11P48066 632 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 COPAP53621 1224 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 KIAA1328Q86T90 577 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 WDR5BQ86VZ2 330 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CHSY1Q86X52 802 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CAMKK1Q8N5S9 505 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TMIEQ8NEW7 156 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 TUBGCP5Q96RT8 1024 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 DTLQ9NZJ0 730 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 USP36Q9P275 1121 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 DKK3Q9UBP4 350 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 LHX3Q9UBR4 397 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SNX12Q9UMY4 172 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SCML1Q9UN30 329 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SPDYE4A6NLX3 237 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ADAM23O75077 832 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 KAT7O95251 611 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SERPINB6P35237 376 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 GARSP41250 739 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SERPINH1P50454 418 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ZBTB16Q05516 673 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 MESP2Q0VG99 397 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 MESDQ14696 234 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 MFSD7Q6UXD7 560 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 BZW1Q7L1Q6 419 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SPEM1Q8N4L4 309 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ASB12Q8WXK4 309 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ALS2CR12Q96Q35 445 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 FBRSL1Q9HCM7 1045 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SMPD4Q9NXE4 827 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 GTSE1Q9NYZ3 720 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 ERVW-1Q9UQF0 538 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 EYSQ5T1H1 3165 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 PCDH15Q96QU1 1955 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 MATN3O15232 486 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 FZD6O60353 706 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 CLSTN1O94985 981 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 EGFP01133 1207 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 APODP05090 189 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 PYGMP11217 842 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 MARCKSL1P49006 195 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 RPS24P62847 133 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 CREB5Q02930 508 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 IFRD2Q12894 506 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 TFDP2Q14188 446 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 SKIV2LQ15477 1246 aaKnown RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 GEN1Q17RS7 908 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 DAAM2Q86T65 1068 aa7.18□□□□□ -1.26
LIMA1-202ENST00000394943 CCDC117Q8IWD4 279 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-202ENST00000394943 PCDH20Q8N6Y1 951 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms