RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CYP11B1P15538 503 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PTPN2P17706 415 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 CYP3A5P20815 502 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PNPLA4P41247 253 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 CCR2P41597 374 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 MAGEA1P43355 309 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 SOX9P48436 509 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ZNF132P52740 706 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 GFPT1Q06210 699 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-201ENST00000355766 TRPC3Q13507 836 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PLK5Q496M5 336 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 XKR4Q5GH76 650 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PAPD7Q5XG87 772 aaKnown RBP7.3□□□□□ -1.24
VPS13A-201ENST00000355766 KIAA1211LQ6NV74 962 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 SYT10Q6XYQ8 523 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 H2AFVQ71UI9 128 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PDZD4Q76G19 769 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-201ENST00000355766 TRAPPC11Q7Z392 1133 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 RHOT2Q8IXI1 618 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 SYCE1Q8N0S2 351 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 LRRC52Q8N7C0 313 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 UBR7Q8N806 425 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 CSGALNACT1Q8TDX6 532 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 RFFLQ8WZ73 363 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 SEMA4DQ92854 862 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 VCPIP1Q96JH7 1222 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ZBTB45Q96K62 511 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ZC3H10Q96K80 434 aaKnown RBP7.3□□□□□ -1.24
VPS13A-201ENST00000355766 KREMEN1Q96MU8 473 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ACAP3Q96P50 834 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ZNF518BQ9C0D4 1074 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ISCUQ9H1K1 167 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 LZTFL1Q9NQ48 299 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 REV1Q9UBZ9 1251 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 ADAMTS1Q9UHI8 967 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 BACE2Q9Y5Z0 518 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 MRFAP1Q9Y605 127 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 TICRRQ7Z2Z1 1910 aa7.3□□□□□ -1.24
VPS13A-201ENST00000355766 PTPRJQ12913 1337 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 FREM2Q5SZK8 3169 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CITO14578 2027 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 NOTCH4Q99466 2003 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 MAST4O15021 2626 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 HEPACAM2A8MVW5 462 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 SPECC1L-ADORA2AF8WAN1 911 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 TMEM189-UBE2V1I3L0A0 370 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 FOXN3O00409 490 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 DDX3XO00571 662 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 DYNC1I1O14576 645 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 PTGESO14684 152 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CHADO15335 359 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 MOSPD3O75425 235 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 NPTXRO95502 500 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 TUBBP07437 444 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 PAEPP09466 180 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CXCL8P10145 99 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 TCP1P17987 556 aaKnown RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ACO1P21399 889 aaKnown RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 GLDCP23378 1020 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 VIPR2P41587 438 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 PXNP49023 591 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 KPNA1P52294 538 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 AMPD2Q01433 879 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ROR1Q01973 937 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CKAP4Q07065 602 aaKnown RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 FCHO2Q0JRZ9 810 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 INCA1Q0VD86 236 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 TMEM132DQ14C87 1099 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ELF2Q15723 593 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ZNF699Q32M78 642 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ZNF569Q5MCW4 686 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 EEF1DP3Q658K8 133 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 SLC8B1Q6J4K2 584 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 DNAJC14Q6Y2X3 702 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ANKS3Q6ZW76 656 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 RALGPS2Q86X27 583 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 PROSER1Q86XN7 944 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ARHGEF19Q8IW93 802 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 MFSD6LQ8IWD5 586 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 SYNPOQ8N3V7 929 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CEP112Q8N8E3 955 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ZSWIM2Q8NEG5 633 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 MNS1Q8NEH6 495 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 OLIG1Q8TAK6 271 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 BAHD1Q8TBE0 780 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 SPATA18Q8TC71 538 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CTNNBL1Q8WYA6 563 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 RHOVQ96L33 236 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 ZSWIM3Q96MP5 696 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 WDR24Q96S15 920 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 AGPAT1Q99943 283 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 MTMR12Q9C0I1 747 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 XYLT2Q9H1B5 865 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 SLC38A7Q9NVC3 462 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 UVRAGQ9P2Y5 699 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 CDC23Q9UJX2 597 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 AJAP1Q9UKB5 411 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-201ENST00000355766 GTF3C4Q9UKN8 822 aa7.29□□□□□ -1.24
VPS13A-201ENST00000355766 KLK13Q9UKR3 277 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms