RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 PCDH10Q9P2E7 1040 aa10.35□□□□□ -0.75
SYNE1-203ENST00000354674 HEY2Q9UBP5 337 aa10.35□□□□□ -0.75
SYNE1-203ENST00000354674 TTC7AQ9ULT0 858 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-203ENST00000354674 NOX1Q9Y5S8 564 aa10.35□□□□□ -0.75
SYNE1-203ENST00000354674 NT5C1B-RDH14C9J2C7 533 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 RASA4BC9J798 803 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TMX2-CTNND1H3BSU7 103 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 RASA4O43374 803 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 S100BP04271 92 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 NR4A1P22736 598 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PBX3P40426 434 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PIGHQ14442 188 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 DCAF12L1Q5VU92 463 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 RNF43Q68DV7 783 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ITPRIPL1Q6GPH6 555 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PSRC1Q6PGN9 363 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 KCNT2Q6UVM3 1135 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TAS1R1Q7RTX1 841 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CCDC105Q8IYK2 499 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 SLC39A11Q8N1S5 342 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 SCML4Q8N228 414 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PIWIL1Q96J94 861 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 MED10Q9BTT4 135 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CDC42EP4Q9H3Q1 356 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 MRPL42Q9Y6G3 142 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 C2CD4BA6NLJ0 364 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 MEI4A8MW99 385 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 DPYSL4O14531 572 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 SERPINB7O75635 380 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 GJB5O95377 273 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PABPC4LP0CB38 370 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ESRRAP11474 423 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ATXN3P54252 364 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CARTPTQ16568 116 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 RTP2Q5QGT7 225 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 C1orf146Q5VVC0 180 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TRNP1Q6NT89 227 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 DCUN1D2Q6PH85 259 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 SLC26A9Q7LBE3 791 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 DCP1BQ8IZD4 617 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ALG3Q92685 438 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PPP1R14BQ96C90 147 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 FUBP3Q96I24 572 aaKnown RBP eCLIP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 AGAP3Q96P47 875 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TTPALQ9BTX7 342 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TPK1Q9H3S4 243 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TCRBV7S2A1N4TA0A589 114 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ARHGAP42A6NI28 874 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 GOLGA8SH3BPF8 625 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CLPTM1O96005 669 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 LMNAP02545 664 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ENO1P06733 434 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 LAG3P18627 525 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 TCEA1P23193 301 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CHKAP35790 457 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 FAM102AQ5T9C2 384 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 OR6B2Q6IFH4 312 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ZNF280DQ6N043 979 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 SCUBE3Q8IX30 993 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 METTL25Q8N6Q8 603 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 COLGALT1Q8NBJ5 622 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 KRT35Q92764 455 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 DGCR14Q96DF8 476 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 CNBD2Q96M20 576 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 PRPF18Q99633 342 aaKnown RBP10.34□□□□□ -0.75
SYNE1-203ENST00000354674 ASNSD1Q9NWL6 643 aa10.34□□□□□ -0.75
SYNE1-203ENST00000354674 H7C4K7 107 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 ZNF143P52747 638 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MAP3K7CLP57077 242 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SMARCB1Q12824 385 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MYLK3Q32MK0 819 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 TMEM259Q4ZIN3 620 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 LRRC38Q5VT99 294 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 ANKS3Q6ZW76 656 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CLNKQ7Z7G1 428 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 ARFGAP1Q8N6T3 406 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 Q8N9G6 341 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 FNDC8Q8TC99 324 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 PHOSPHO2Q8TCD6 241 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SP7Q8TDD2 431 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 ZNF558Q96NG5 402 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 KCNK16Q96T55 309 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 C11orf84Q9BUA3 381 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 HTATIP2Q9BUP3 242 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 RHOBTB2Q9BYZ6 727 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 TAS2R1Q9NYW7 299 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CXXC1Q9P0U4 656 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 STX18Q9P2W9 335 aaKnown RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 GRID1Q9ULK0 1009 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 BACE2Q9Y5Z0 518 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MAD1L1Q9Y6D9 718 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 B2RBV5 119 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 F8VP50 259 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 PSTPIP1O43586 416 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 NUDT17P0C025 328 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 BDNFP23560 247 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 PEX2P28328 305 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SLC5A2P31639 672 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MAGEA11P43364 429 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms