RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 E9PAM4 449 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 OPHN1O60890 802 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 CCR1P32246 355 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PDK4Q16654 411 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PARP6Q2NL67 630 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 IL31Q6EBC2 164 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ZNF280DQ6N043 979 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ZSCAN18Q8TBC5 510 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 FAM136AQ96C01 138 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PPP1R36Q96LQ0 422 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 FICDQ9BVA6 458 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 C20orf27Q9GZN8 174 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SLC40A1Q9NP59 571 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 IARS2Q9NSE4 1012 aaKnown RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 MARCH5Q9NX47 278 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 FAM237BA0A1B0GVD1 139 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 KRT37O76014 449 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 ALDH2P05091 517 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 GLUD2P49448 558 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 PAPOLAP51003 745 aaKnown RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 IRF9Q00978 393 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 CHI3L2Q15782 390 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 TRIM74Q86UV6 250 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 TRIM73Q86UV7 250 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 ARHGAP12Q8IWW6 846 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 PPM1EQ8WY54 764 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 APOPT1Q96IL0 206 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 SHCBP1LQ9BZQ2 653 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 RBM22Q9NW64 420 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 SMPD4Q9NXE4 827 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 FNDC3AQ9Y2H6 1198 aaKnown RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 A0A0U1RQS6 177 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 CCNB1P14635 433 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 TPSB2P20231 275 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 MAGEA3P43357 314 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 SERPINB4P48594 390 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 TPSAB1Q15661 275 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 TTC7BQ86TV6 843 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 NUP93Q8N1F7 819 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 MCUQ8NE86 351 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 IGSF8Q969P0 613 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 CASD1Q96PB1 797 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 XAB2Q9HCS7 855 aaKnown RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 NT5MQ9NPB1 228 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 ABCC13Q9NSE7 274 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 C20orf96Q9NUD7 363 aaPredicted RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 ARMCX1Q9P291 453 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 CPSF2Q9P2I0 782 aaKnown RBP12.85□□□□□ -0.35
LIMK1-201ENST00000336180 HAO1Q9UJM8 370 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 DSEQ9UL01 958 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 ARL2BPQ9Y2Y0 163 aa12.85□□□□□ -0.35
LIMK1-201ENST00000336180 MOXD2PA6NHM9 499 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 EDF1O60869 148 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 OAS1P00973 400 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 HLA-DQB2P05538 268 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FDFT1P37268 417 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 TMPRSS15P98073 1019 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PPIDQ08752 370 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 TEX44Q53QW1 395 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FUT10Q6P4F1 479 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 LRRC8BQ6P9F7 803 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PACS1Q6VY07 963 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 LDB1Q86U70 411 aaPredicted RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PSTKQ8IV42 348 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 NTAN1Q96AB6 310 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 EXOC2Q96KP1 924 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 SMIM14Q96QK8 99 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 CYP2S1Q96SQ9 504 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ZCWPW1Q9H0M4 648 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 TXNDC16Q9P2K2 825 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 CHKBQ9Y259 395 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PCDHB5Q9Y5E4 795 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 HACD1B0YJ81 288 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 VNN2O95498 520 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 F9P00740 461 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ALDOAP04075 364 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 CPA2P48052 419 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 GLRBP48167 497 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 TBX4P57082 545 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 CTBP1Q13363 440 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PTPRCAPQ14761 206 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FAM26DQ5JW98 314 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 BZW1Q7L1Q6 419 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 STRA8Q7Z7C7 330 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 MTDHQ86UE4 582 aaKnown RBP12.84□□□□□ -0.35
LIMK1-201ENST00000336180 VSIG1Q86XK7 387 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FAM126BQ8IXS8 530 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ZNF276Q8N554 614 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FTHL17Q9BXU8 183 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 NACA2Q9H009 215 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 GKN1Q9NS71 199 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ETAA1Q9NY74 926 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 NEU3Q9UQ49 428 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ATP11BQ9Y2G3 1177 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 ACTL7BQ9Y614 415 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 FAM159BA6NKW6 160 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 TSPAN3O60637 253 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 PRKCHP24723 683 aa12.84□□□□□ -0.35
LIMK1-201ENST00000336180 OR1D2P34982 312 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms