RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 FBXL22Q6P050 247 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 UMODL1-AS1Q8N2C9 162 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 ZNF276Q8N554 614 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 ZNF461Q8TAF7 563 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 SGSM3Q96HU1 749 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 KLF6Q99612 283 aaPredicted RBP17.33■□□□□ 0.37
DDX41-201ENST00000330503 ZNF180Q9UJW8 692 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 IKBKGQ9Y6K9 419 aa17.33■□□□□ 0.37
DDX41-201ENST00000330503 ERI2A8K979 691 aaKnown RBP17.33■□□□□ 0.36
DDX41-201ENST00000330503 MT-ND3P03897 115 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 FOXN2P32314 431 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 SNX30Q5VWJ9 437 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 RAP1GAP2Q684P5 730 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 CASC4Q6P4E1 433 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 TAX1BP1Q86VP1 789 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 BANPQ8N9N5 519 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 MYEOVQ96EZ4 313 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 SEC16BQ96JE7 1060 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 ZYG11BQ9C0D3 744 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 TMEM248Q9NWD8 314 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 UBP1Q9NZI7 540 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 FNIP2Q9P278 1114 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 DOCK4Q8N1I0 1966 aa17.33■□□□□ 0.36
DDX41-201ENST00000330503 GOLGA6L7A0A1B0GV03 622 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 TCP11X1B4DZS4 312 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 GOLGA8RI6L899 631 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 KIAA0355O15063 1070 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 VIMP08670 466 aaKnown RBP17.32■□□□□ 0.36
DDX41-201ENST00000330503 ACRP10323 421 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 PGAM1P18669 254 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 KCNQ1P51787 676 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 BTG3Q14201 252 aaPredicted RBP17.32■□□□□ 0.36
DDX41-201ENST00000330503 TTC39BQ5VTQ0 682 aaPredicted RBP17.32■□□□□ 0.36
DDX41-201ENST00000330503 NUGGCQ68CJ6 796 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 NADSYN1Q6IA69 706 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 TFAP2DQ7Z6R9 452 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 PIGWQ7Z7B1 504 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 CCNJLQ8IV13 435 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 MAGEB18Q96M61 343 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 FCRL3Q96P31 734 aaPredicted RBP17.32■□□□□ 0.36
DDX41-201ENST00000330503 HERC2P3Q9BVR0 1158 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 GLOD4Q9HC38 313 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 ZNF212Q9UDV6 495 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 GRID1Q9ULK0 1009 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 ZNF840PA6NDX5 716 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 PEX11BO96011 259 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 CA4P22748 312 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 LRRC49Q8IUZ0 686 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 SPATA22Q8NHS9 363 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 TMEM169Q96HH4 297 aa17.32■□□□□ 0.36
DDX41-201ENST00000330503 IPO11Q9UI26 975 aaKnown RBP17.32■□□□□ 0.36
DDX41-201ENST00000330503 HMX2A2RU54 273 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 TRIM49D1C9J1S8 452 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 GJB5O95377 273 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 TAC1P20366 129 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 NDST2P52849 883 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 SLC18A2Q05940 514 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 CRYMQ14894 314 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 TPGS2Q68CL5 300 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 CES3Q6UWW8 571 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 CMTR2Q8IYT2 770 aaKnown RBP17.31■□□□□ 0.36
DDX41-201ENST00000330503 TTC17Q96AE7 1141 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 FCRL5Q96RD9 977 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 APOL2Q9BQE5 337 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 NAT9Q9BTE0 207 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 SPG21Q9NZD8 308 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 HSFX1Q9UBD0 423 aa17.31■□□□□ 0.36
DDX41-201ENST00000330503 HBS1LQ9Y450 684 aaKnown RBP17.31■□□□□ 0.36
DDX41-201ENST00000330503 SNRPAP09012 282 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 KPNA1P52294 538 aaPredicted RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 NIPAL4Q0D2K0 466 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 PRPSAP1Q14558 356 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 CERCAMQ5T4B2 595 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 C6orf89Q6UWU4 347 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 DDX53Q86TM3 631 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.3■□□□□ 0.36
DDX41-201ENST00000330503 AUTS2Q8WXX7 1259 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 OVCA2Q8WZ82 227 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 HMCESQ96FZ2 354 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 PAIP2Q9BPZ3 127 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 C12orf65Q9H3J6 166 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 LRRC40Q9H9A6 602 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 CYP4F11Q9HBI6 524 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 RBM22Q9NW64 420 aaKnown RBP eCLIP17.3■□□□□ 0.36
DDX41-201ENST00000330503 DNMT3LQ9UJW3 386 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 GGA2Q9UJY4 613 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 PSMD3O43242 534 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 HLA-DQB2P05538 268 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 ATP5C1P36542 298 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 NPY2RP49146 381 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 IL9RQ01113 521 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 RAB33AQ14088 237 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 TIGD7Q6NT04 549 aaPredicted RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 ALKBH8Q96BT7 664 aaKnown RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 ZNF512Q96ME7 567 aaPredicted RBP17.3■□□□□ 0.36
DDX41-201ENST00000330503 BFARQ9NZS9 450 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 SLC17A6Q9P2U8 582 aa17.3■□□□□ 0.36
DDX41-201ENST00000330503 J3KR12 359 aa17.29■□□□□ 0.36
DDX41-201ENST00000330503 MT-CYBP00156 380 aaPredicted RBP17.29■□□□□ 0.36
DDX41-201ENST00000330503 PYGBP11216 843 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms