RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF221Q9UK13 617 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 ENTPD4Q9Y227 616 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 MTF2Q9Y483 593 aaPredicted RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 PPP2R3BQ9Y5P8 575 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 MMP10P09238 476 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 HOXB6P17509 224 aaKnown RBP14.08□□□□□ -0.15
CSPG4-201ENST00000308508 ACO1P21399 889 aaKnown RBP14.08□□□□□ -0.15
CSPG4-201ENST00000308508 NFIAQ12857 509 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 AMHR2Q16671 573 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 SYNE4Q8N205 404 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 MEIOBQ8N635 442 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 TMEM159Q96B96 161 aa14.08□□□□□ -0.15
CSPG4-201ENST00000308508 TNPO3Q9Y5L0 923 aaKnown RBP14.08□□□□□ -0.15
CSPG4-201ENST00000308508 ATXN2Q99700 1313 aaKnown RBP14.08□□□□□ -0.15
CSPG4-201ENST00000308508 CTSHP09668 335 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SLC5A9Q2M3M2 681 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SAMD3Q8N6K7 520 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 REXO5Q96IC2 774 aaKnown RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SPATA5L1Q9BVQ7 753 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ZFYVE16Q7Z3T8 1539 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SERPINF2P08697 491 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 CCDC166P0CW27 439 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 TNFRSF8P28908 595 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 RPA3P35244 121 aaPredicted RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 NAMPTP43490 491 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 BNIP2Q12982 314 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ILDR2Q71H61 639 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF571Q7Z3V5 609 aaPredicted RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ACOT1Q86TX2 421 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ARMC8Q8IUR7 673 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 CARNMT1Q8N4J0 409 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 TRPV1Q8NER1 839 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PIWIL2Q8TC59 973 aaKnown RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 KCNH7Q9NS40 1196 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 NARFQ9UHQ1 456 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 LRRC14BA6NHZ5 514 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 NDUFB10O96000 172 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PGK1P00558 417 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ERICH5Q6P6B1 374 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 TMC7Q7Z402 723 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SUN5Q8TC36 379 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 FAM129BQ96TA1 746 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 TBCDQ9BTW9 1192 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ZCCHC2Q9C0B9 1178 aaKnown RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 HACD1B0YJ81 288 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SNRPB2P08579 225 aaKnown RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 DNAJB2P25686 324 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PDIA6Q15084 440 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ADGRF2Q8IZF7 708 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 FBXO30Q8TB52 745 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 GTF3C2Q8WUA4 911 aaPredicted RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PRR12Q9ULL5 1215 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PXDNLA1KZ92 1463 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 A2ML1A8K2U0 1454 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 FAM25EA8MYX2 175 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 PTPN3P26045 913 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 FOLH1Q04609 750 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 SWI5Q1ZZU3 235 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 CKAP2Q8WWK9 683 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 VPS35Q96QK1 796 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ZMYM5Q9UJ78 669 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 NUDT14O95848 222 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 ACAT1P24752 427 aaKnown RBP14.08□□□□□ -0.16
CSPG4-201ENST00000308508 RHOAP61586 193 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 NINJ2Q9NZG7 142 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 VPS28Q9UK41 221 aa14.08□□□□□ -0.16
CSPG4-201ENST00000308508 METP08581 1390 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 IRGMA1A4Y4 181 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 FOXO4P98177 505 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ST3GAL1Q11201 340 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RFX4Q33E94 735 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CHCHD6Q9BRQ6 235 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 MTIF3Q9H2K0 278 aaKnown RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 GPC6Q9Y625 555 aaPredicted RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CHURC1-FNTBB4DL54 471 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 TEX46H3BTG2 121 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 PGRMC2O15173 223 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CYP27B1O15528 508 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 PSIP1O75475 530 aaKnown RBP14.07□□□□□ -0.16
CSPG4-201ENST00000308508 IL2P60568 153 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 MARC1Q5VT66 337 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ARHGAP36Q6ZRI8 547 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 NT5DC3Q86UY8 548 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ZDHHC17Q8IUH5 632 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 SYT12Q8IV01 421 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CAB39LQ9H9S4 337 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 COX7A2P14406 83 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF470Q6ECI4 717 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 TTI2Q6NXR4 508 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 GPSM1Q86YR5 675 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 VCPIP1Q96JH7 1222 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CGRRF1Q99675 332 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RUSC1Q9BVN2 902 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 LACRTQ9GZZ8 138 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 CYP3A43Q9HB55 503 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 OPTCQ9UBM4 332 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 ACTL7BQ9Y614 415 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RGSL1A5PLK6 1076 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 RHOCP08134 193 aa14.07□□□□□ -0.16
CSPG4-201ENST00000308508 TNNI3P19429 210 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms