RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ACER1Q8TDN7 264 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 GTF3C2Q8WUA4 911 aaPredicted RBP17.64■□□□□ 0.41
SYNPO-201ENST00000307662 ABCB10Q9NRK6 738 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 ADAM28Q9UKQ2 775 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 SPATA31D1Q6ZQQ2 1576 aa17.64■□□□□ 0.41
SYNPO-201ENST00000307662 LOC100506127A0A0U1RQW1 187 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 SHOX2O60902 331 aaPredicted RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 LBPP18428 481 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 ZNF846Q147U1 533 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 MARC1Q5VT66 337 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 GPR107Q5VW38 600 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 LRRC55Q6ZSA7 311 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 ALYREFQ86V81 257 aaKnown RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 TXNRD3Q86VQ6 643 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 MIB1Q86YT6 1006 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 ENTPD7Q9NQZ7 604 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 ATP6V1HQ9UI12 483 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 CXCL8P10145 99 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 CCR1P32246 355 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 LRRC38Q5VT99 294 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 FAM13CQ8NE31 585 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 BORCS5Q969J3 196 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 MARK4Q96L34 752 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 TEKT5Q96M29 485 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 PXDNQ92626 1479 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 KLRC4O43908 158 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 NDST1P52848 882 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 PLK1P53350 603 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 IKBIPQ70UQ0 350 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 PALB2Q86YC2 1186 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 REEP1Q9H902 201 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 ZNF624Q9P2J8 865 aaPredicted RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 PACSIN3Q9UKS6 424 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 RECQL5O94762 991 aaPredicted RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 GMPSP49915 693 aaPredicted RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 SOX10P56693 466 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 KCNK18Q7Z418 384 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 MTG1Q9BT17 334 aaPredicted RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 YIPF2Q9BWQ6 316 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 IL17RBQ9NRM6 502 aa17.63■□□□□ 0.41
SYNPO-201ENST00000307662 PRPF19Q9UMS4 504 aaKnown RBP17.63■□□□□ 0.41
SYNPO-201ENST00000307662 LTFP02788 710 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 SNAPC2Q13487 334 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ERAP2Q6P179 960 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 MILR1Q7Z6M3 343 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 CACTIN-AS1Q8N1I8 211 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 UXS1Q8NBZ7 420 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ACMSDQ8TDX5 336 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 CPB2Q96IY4 423 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 SLC4A5Q9BY07 1137 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 VAV3Q9UKW4 847 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 REXO2Q9Y3B8 237 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 H3BN98 237 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 KCNH1O95259 989 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 PABPC1P11940 636 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 PPP2R1BP30154 601 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 MAMLD1Q13495 774 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 SHROOM1Q2M3G4 852 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 FBXO30Q8TB52 745 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 MIEF1Q9NQG6 463 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 GAKO14976 1311 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ITGAVP06756 1048 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ZSWIM7Q19AV6 140 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 OTOP1Q7RTM1 612 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 TRABD2AQ86V40 505 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 PSMA8Q8TAA3 256 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 TCF12Q99081 682 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ACSS3Q9H6R3 686 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ADGRB2O60241 1585 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 NPM3O75607 178 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 HOXB8P17481 243 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 SLC9A5Q14940 896 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 PRMT6Q96LA8 375 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 TSEN34Q9BSV6 310 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 EPB41L1Q9H4G0 881 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 PXMP2Q9NR77 195 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 SH3BP4Q9P0V3 963 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 HBS1LQ9Y450 684 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 UMODL1Q5DID0 1318 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 RGS14O43566 566 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ALOX5P09917 674 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 C6orf222P0C671 652 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 RPL22P35268 128 aaKnown RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 LHX1P48742 406 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 ZIK1Q3SY52 487 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 MTMR9Q96QG7 549 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 VAT1Q99536 393 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 TBCDQ9BTW9 1192 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 TIMMDC1Q9NPL8 285 aa17.62■□□□□ 0.41
SYNPO-201ENST00000307662 FBXO6Q9NRD1 293 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-201ENST00000307662 A8MUI8 341 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 FAM86B1E9PN63 330 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 NAGLUP54802 743 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 EFCAB3Q8N7B9 438 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 FBXO32Q969P5 355 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 KCNK1O00180 336 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 ABCB1P08183 1280 aaPredicted RBP17.61■□□□□ 0.41
SYNPO-201ENST00000307662 IL1R1P14778 569 aa17.61■□□□□ 0.41
SYNPO-201ENST00000307662 GLRA2P23416 452 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms