RNA–Protein interactions for RNA: ENST00000306014.9

DDX54-201, Transcript of DEAD-box helicase 54, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDX54, Length 4,377 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-201ENST00000306014 CELF3Q5SZQ8 465 aaKnown RBP13.53□□□□□ -0.24
DDX54-201ENST00000306014 C1orf220Q5T0J3 134 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 CWF19L1Q69YN2 538 aaKnown RBP13.53□□□□□ -0.24
DDX54-201ENST00000306014 ARPINQ7Z6K5 226 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 FAM228AQ86W67 206 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 MIB1Q86YT6 1006 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 DLG3Q92796 817 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 THUMPD3Q9BV44 507 aaKnown RBP13.53□□□□□ -0.24
DDX54-201ENST00000306014 SLC4A5Q9BY07 1137 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 ASPSCR1Q9BZE9 553 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 EPB41L4BQ9H329 900 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 RIC8BQ9NVN3 520 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 ABI2Q9NYB9 513 aaPredicted RBP13.53□□□□□ -0.24
DDX54-201ENST00000306014 COPG2Q9UBF2 871 aa13.53□□□□□ -0.24
DDX54-201ENST00000306014 PSMD12O00232 456 aaPredicted RBP13.52□□□□□ -0.24
DDX54-201ENST00000306014 EDIL3O43854 480 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 C2P06681 752 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 USP17L7P0C7H9 530 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 NOS2P35228 1153 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 SIX1Q15475 284 aaPredicted RBP13.52□□□□□ -0.24
DDX54-201ENST00000306014 HASPINQ8TF76 798 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 GORASP1Q9BQQ3 440 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 SYT15Q9BQS2 421 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 HERPUD2Q9BSE4 406 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 IL22Q9GZX6 179 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 POPDC2Q9HBU9 364 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 FAM8A1Q9UBU6 413 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 ZNF180Q9UJW8 692 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 RNF112Q9ULX5 631 aa13.52□□□□□ -0.24
DDX54-201ENST00000306014 ZNF541Q9H0D2 1346 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 SLC18A1P54219 525 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 PRKAA2P54646 552 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 PRKD1Q15139 912 aaPredicted RBP13.52□□□□□ -0.25
DDX54-201ENST00000306014 USP50Q70EL3 339 aaPredicted RBP13.52□□□□□ -0.25
DDX54-201ENST00000306014 NT5DC4Q86YG4 428 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 CSPG4P5Q96PW8 444 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 MRPL45Q9BRJ2 306 aaKnown RBP13.52□□□□□ -0.25
DDX54-201ENST00000306014 TKTL2Q9H0I9 626 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 CDH19Q9H159 772 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 LATS2Q9NRM7 1088 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 FETUBQ9UGM5 382 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 ANKRD6Q9Y2G4 727 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 RAP2CQ9Y3L5 183 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 NR2E3Q9Y5X4 410 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 TIAM2Q8IVF5 1701 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 M0R3G1 203 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 CLOCKO15516 846 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 ERCC2P18074 760 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 CRABP2P29373 138 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 TCEAL1Q15170 157 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 RIN3Q8TB24 985 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 FAM162AQ96A26 154 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 PAIP1Q9H074 479 aaKnown RBP13.52□□□□□ -0.25
DDX54-201ENST00000306014 MROH8Q9H579 483 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 XPR1Q9UBH6 696 aa13.52□□□□□ -0.25
DDX54-201ENST00000306014 MYO1GB0I1T2 1018 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 LGALS2P05162 132 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 ARF4P18085 180 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 XPAP23025 273 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 MPSTP25325 297 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 CCR1P32246 355 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 NOVP48745 357 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 MAPK10P53779 464 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 PSME3P61289 254 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 KLF1Q13351 362 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 SAMD4BQ5PRF9 694 aaKnown RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 SCARA3Q6AZY7 606 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 PMF1Q6P1K2 205 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 LCLAT1Q6UWP7 414 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 AMIGO2Q86SJ2 522 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 ADCK1Q86TW2 530 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 RP9Q8TA86 221 aaKnown RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 SNX19Q92543 992 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 RPRD1AQ96P16 312 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 EBF3Q9H4W6 596 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 UTP6Q9NYH9 597 aaKnown RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 C6orf203Q9P0P8 240 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 NUP98P52948 1817 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 ATP6AP2A0A1C7CYW4 349 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 KLRG2A4D1S0 409 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 ZNF839A8K0R7 811 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 CXorf49A8MYA2 514 aaPredicted RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 ATP6AP2O75787 350 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 SOAT2O75908 522 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 HNRNPLP14866 589 aaKnown RBP eCLIP13.51□□□□□ -0.25
DDX54-201ENST00000306014 VAV1P15498 845 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 LRPAP1P30533 357 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 ADARP55265 1226 aaKnown RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 CTBP1Q13363 440 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 NEDD8Q15843 81 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 TFAP2DQ7Z6R9 452 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 ANKRD52Q8NB46 1076 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 SLC25A23Q9BV35 468 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 OR12D3Q9UGF7 316 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 BCLAF3A2AJT9 711 aaKnown RBP13.51□□□□□ -0.25
DDX54-201ENST00000306014 PLIN3O60664 434 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 TSPAN8P19075 237 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 CDC16Q13042 620 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 UNC93AQ86WB7 457 aa13.51□□□□□ -0.25
DDX54-201ENST00000306014 TSPAN14Q8NG11 270 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms