RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NUDT5Q9UKK9 219 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 DFFAO00273 331 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 MSI1O43347 362 aaKnown RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 ASGR1P07306 291 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 PSEN1P49768 467 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 C4orf50Q6ZRC1 276 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 CNTD1Q8N815 330 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ACVR1CQ8NER5 493 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 ZNF419Q96HQ0 510 aaPredicted RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 TEKT5Q96M29 485 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 LBHD1Q9BQE6 289 aaPredicted RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 NEU3Q9UQ49 428 aa20.5■□□□□ 0.87
VPS53-201ENST00000291074 COL4A4P53420 1690 aaPredicted RBP20.5■□□□□ 0.87
VPS53-201ENST00000291074 CAPN14A8MX76 684 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 SLC1A6P48664 564 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 LPIN1Q14693 890 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 STXBP5Q5T5C0 1151 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 GRTP1Q5TC63 336 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 OVOS1Q6IE37 1185 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 FSTL4Q6MZW2 842 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 RSPH1Q8WYR4 309 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 IRGQQ8WZA9 623 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 DPF3Q92784 378 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 TUBB6Q9BUF5 446 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 SFMBT1Q9UHJ3 866 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 MYO16Q9Y6X6 1858 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 USP1O94782 785 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 OR4Q2P0C623 313 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 UBAP2LQ14157 1087 aaKnown RBP20.49■□□□□ 0.87
VPS53-201ENST00000291074 ITPRIPL1Q6GPH6 555 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 RGMBQ6NW40 437 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 DCLRE1AQ6PJP8 1040 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 TNS4Q8IZW8 715 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 SPATA22Q8NHS9 363 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 TRHDEQ9UKU6 1024 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 PATJQ8NI35 1801 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 MYLKQ15746 1914 aa20.49■□□□□ 0.87
VPS53-201ENST00000291074 ZNF623O75123 536 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 CYP11A1P05108 521 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 TPBGLP0DKB5 382 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 NMBRP28336 390 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 PGGT1BP53609 377 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 IRF9Q00978 393 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 PPP2R5DQ14738 602 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 WASHC2DQ5SRD0 308 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 MCUR1Q96AQ8 359 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 UPF3AQ9H1J1 476 aaKnown RBP20.48■□□□□ 0.87
VPS53-201ENST00000291074 SPC25Q9HBM1 224 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 C20orf96Q9NUD7 363 aaPredicted RBP20.48■□□□□ 0.87
VPS53-201ENST00000291074 A0A0U1RQF3 1178 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 MTSS1O43312 755 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 LIMK2P53671 638 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 DSC3Q14574 896 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 FAM91A1Q658Y4 838 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 SAPCD2Q86UD0 394 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 GIMAP7Q8NHV1 300 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 ZNF570Q96NI8 536 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 ZIC5Q96T25 663 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 BRD8Q9H0E9 1235 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 COPG2Q9UBF2 871 aa20.48■□□□□ 0.87
VPS53-201ENST00000291074 B4GALT3O60512 393 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 ADAMTS4O75173 837 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 KDSRQ06136 332 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 TUSC3Q13454 348 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 KCNA10Q16322 511 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 KHDC1Q4VXA5 237 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 MFSD14CQ5VZR4 134 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 KCNMB4Q86W47 210 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 TEX9Q8N6V9 391 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 PIWIL2Q8TC59 973 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 N4BP2L2Q92802 583 aaPredicted RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 IARS2Q9NSE4 1012 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 PNPOQ9NVS9 261 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.47■□□□□ 0.871e-7■□□□□ 10.9
VPS53-201ENST00000291074 NYNRINQ9P2P1 1898 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 ERI2A8K979 691 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 B2RBV5 119 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 M0QZQ0 153 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 IGLV3-25P01717 112 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 SPRP35270 261 aaPredicted RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 FLT3LGP49771 235 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 SLC5A3P53794 718 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 ITGA9Q13797 1035 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 SORT1Q99523 831 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 TRMT13Q9NUP7 481 aaKnown RBP20.47■□□□□ 0.87
VPS53-201ENST00000291074 NDFIP2Q9NV92 336 aa20.47■□□□□ 0.87
VPS53-201ENST00000291074 PRR5-ARHGAP8B1AHC4 643 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 IRAK2O43187 625 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 MT-CYBP00156 380 aaPredicted RBP20.46■□□□□ 0.87
VPS53-201ENST00000291074 SERPINE1P05121 402 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 GNAZP19086 355 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 MAGEA12P43365 314 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 ARHGAP8P85298 464 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 GRIK3Q13003 919 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 KPNB1Q14974 876 aaKnown RBP20.46■□□□□ 0.87
VPS53-201ENST00000291074 MAVSQ7Z434 540 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 ARHGAP12Q8IWW6 846 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 CASP10Q92851 521 aa20.46■□□□□ 0.87
VPS53-201ENST00000291074 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.46■□□□□ 0.87
VPS53-201ENST00000291074 PAGE1O75459 146 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms