RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MTG1Q9BT17 334 aaPredicted RBP10.94□□□□□ -0.66
CD44-201ENST00000263398 UGT2B28Q9BY64 529 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 FHDC1Q9C0D6 1143 aaPredicted RBP10.94□□□□□ -0.66
CD44-201ENST00000263398 PRDM12Q9H4Q4 367 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 COPS7BQ9H9Q2 264 aaPredicted RBP10.94□□□□□ -0.66
CD44-201ENST00000263398 SYBUQ9NX95 663 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 CPA4Q9UI42 421 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 SNUPNO95149 360 aaKnown RBP10.94□□□□□ -0.66
CD44-201ENST00000263398 GUCA1CO95843 209 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 USP17L7P0C7H9 530 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 PKNOX1P55347 436 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 MFSD10Q14728 455 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 FAM183BPQ6ZVS7 135 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 CYP4Z1Q86W10 505 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 CAMKK2Q96RR4 588 aa10.94□□□□□ -0.66
CD44-201ENST00000263398 KIF13AQ9H1H9 1805 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 EDF1O60869 148 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 LCA5LO95447 670 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 NPR3P17342 541 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ACBD5Q5T8D3 534 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 IQSEC1Q6DN90 963 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 IL31RAQ8NI17 732 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ACO2Q99798 780 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 HPS4Q9NQG7 708 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 CAB39Q9Y376 341 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 C2CD2Q9Y426 696 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PDHXO00330 501 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 FGF10O15520 208 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 SLURP2P0DP57 97 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 BDNFP23560 247 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ATP5F1P24539 256 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 PTDSS1P48651 473 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 SLC25A3Q00325 362 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 NCF4Q15080 339 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 CELF3Q5SZQ8 465 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 CATSPERGQ6ZRH7 1159 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PIWIL4Q7Z3Z4 852 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 MILR1Q7Z6M3 343 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 DEFB132Q7Z7B7 95 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PIGZQ86VD9 579 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 SETD9Q8NE22 299 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PWWP2AQ96N64 755 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 POLR1EQ9GZS1 481 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 STN1Q9H668 368 aaKnown RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 ABCC13Q9NSE7 274 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 LIMD1Q9UGP4 676 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 VAV3Q9UKW4 847 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PCDHA11Q9Y5I1 949 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 TTLL13PA6NNM8 815 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 BTN3A1O00481 513 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 HDAC3O15379 428 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 MAP3K13O43283 966 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ENTPD5O75356 428 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 KATNA1O75449 491 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 RTN3O95197 1032 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 LBPP18428 481 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ATP4AP20648 1035 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 LRPAP1P30533 357 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ABCG1P45844 678 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 EPHB3P54753 998 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 SDE2Q6IQ49 451 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 TLK2Q86UE8 772 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ZDHHC13Q8IUH4 622 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 CLVS1Q8IUQ0 354 aaPredicted RBP10.93□□□□□ -0.66
CD44-201ENST00000263398 KIAA0319LQ8IZA0 1049 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 PGBD3Q8N328 593 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ANKRD52Q8NB46 1076 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ARRDC4Q8NCT1 418 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 LENG9Q96B70 501 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 GAD1Q99259 594 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 ROGDIQ9GZN7 287 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 MTFR1LQ9H019 292 aa10.93□□□□□ -0.66
CD44-201ENST00000263398 BIRC5O15392 142 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 LTA4HP09960 611 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 PSMB9P28065 219 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SLC16A1P53985 500 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 CRADDP78560 199 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TMEM26Q6ZUK4 368 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 GLT6D1Q7Z4J2 308 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 ZNF467Q7Z7K2 595 aaPredicted RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 MPP4Q96JB8 637 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SH3GL2Q99962 352 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PRRG3Q9BZD7 231 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 EFR3BQ9Y2G0 817 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 A0A1B0GW55 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TMEM191CA6NGB0 347 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 TSPAN3O60637 253 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SEC22BO75396 215 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L2P0CJ85 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L3P0CJ86 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L4P0CJ87 422 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L5P0CJ88 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L6P0CJ89 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 DUX4L7P0CJ90 424 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 SNHG28P0DPA3 235 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PIK3CGP48736 1102 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 PSEN2P49810 448 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 NEK3P51956 506 aa10.92□□□□□ -0.66
CD44-201ENST00000263398 C1DQ13901 141 aaKnown RBP10.92□□□□□ -0.66
CD44-201ENST00000263398 MFSD5Q6N075 450 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms