RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 XRCC1P18887 633 aaPredicted RBP9.32□□□□□ -0.92
MSH4-201ENST00000263187 NFKB1P19838 968 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 FGFR3P22607 806 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 CRABP2P29373 138 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MATKP42679 507 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MAGEA6P43360 314 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NR2C2P49116 596 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 BCAT1P54687 386 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ZBTB17Q13105 803 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 GRM3Q14832 879 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 WSCD1Q658N2 575 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 PDSS2Q86YH6 399 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SLC41A1Q8IVJ1 513 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 DENND6AQ8IWF6 608 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.32□□□□□ -0.92
MSH4-201ENST00000263187 TTC16Q8NEE8 873 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 APPL2Q8NEU8 664 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 URGCPQ8TCY9 931 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 TMEM40Q8WWA1 233 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 KCNN1Q92952 543 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 RNF34Q969K3 372 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 OPTNQ96CV9 577 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 CMTM5Q96DZ9 223 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NPAS2Q99743 824 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 FTHL17Q9BXU8 183 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 VRTNQ9H8Y1 702 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 NMRAL1Q9HBL8 299 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 TCF7L2Q9NQB0 619 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 MORF4L1Q9UBU8 362 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 KIAA1257Q9ULG3 409 aa9.32□□□□□ -0.92
MSH4-201ENST00000263187 ZNF638Q14966 1978 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 YJEFN3A6XGL0 299 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PIGNO95427 931 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 CHRM1P11229 460 aaPredicted RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 HNRNPLP14866 589 aaKnown RBP eCLIP9.31□□□□□ -0.92
MSH4-201ENST00000263187 GRIA4P48058 902 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 TKTL1P51854 596 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 THOP1P52888 689 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 FOLH1Q04609 750 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 USP10Q14694 798 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 RBBP5Q15291 538 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 ARL13AQ5H913 290 aaPredicted RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 ZNF484Q5JVG2 852 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 ARHGAP36Q6ZRI8 547 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 GPRIN1Q7Z2K8 1008 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 EXOC8Q8IYI6 725 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 GALNT15Q8N3T1 639 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 FBXW8Q8N3Y1 598 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PCDH20Q8N6Y1 951 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 DNAJB3Q8WWF6 145 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PPP2R3CQ969Q6 453 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 DCPSQ96C86 337 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 OLFM3Q96PB7 478 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 C16orf70Q9BSU1 422 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 GCOM2Q9BZD3 368 aaPredicted RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 DDIT4Q9NX09 232 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 BFARQ9NZS9 450 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 ZDHHC2Q9UIJ5 367 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 ARHGAP26Q9UNA1 814 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 RUVBL2Q9Y230 463 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 USP3Q9Y6I4 520 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 A0A1B0GTW7 788 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 SMIM28A0A1B0GU29 152 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 G3V2L1 256 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 DFFAO00273 331 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 CLGNO14967 610 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 CSPG5O95196 566 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 IL1BP01584 269 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PTPN3P26045 913 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 FDFT1P37268 417 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 RAB27AP51159 221 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 MPP1Q00013 466 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 POU5F1BQ06416 359 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PDK3Q15120 406 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 LSM12Q3MHD2 195 aaKnown RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 ANKRD20A4Q4UJ75 823 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 NOMO2Q5JPE7 1267 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 TMCO4Q5TGY1 634 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 OTUD1Q5VV17 481 aaPredicted RBP9.31□□□□□ -0.92
MSH4-201ENST00000263187 KCNMB4Q86W47 210 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 PHF12Q96QT6 1004 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 ULBP1Q9BZM6 244 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 CDH19Q9H159 772 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 TLL2Q9Y6L7 1015 aa9.31□□□□□ -0.92
MSH4-201ENST00000263187 CCL22O00626 93 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 DYNC1LI2O43237 492 aaPredicted RBP9.3□□□□□ -0.92
MSH4-201ENST00000263187 HUS1O60921 280 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 FKBP6O75344 327 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 ALDH1A2O94788 518 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 PIK3R1P27986 724 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 SPRP35270 261 aaPredicted RBP9.3□□□□□ -0.92
MSH4-201ENST00000263187 GARSP41250 739 aaKnown RBP9.3□□□□□ -0.92
MSH4-201ENST00000263187 PTPN9P43378 593 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 CXCR3P49682 368 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 NME5P56597 212 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 TPI1P60174 286 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 MS4A2Q01362 244 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 ROR2Q01974 943 aaKnown RBP9.3□□□□□ -0.92
MSH4-201ENST00000263187 MPP3Q13368 585 aa9.3□□□□□ -0.92
MSH4-201ENST00000263187 PDK1Q15118 436 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms