RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ILDR2Q71H61 639 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PIGZQ86VD9 579 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 DHFR2Q86XF0 187 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SLCO2A1Q92959 643 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 OPTNQ96CV9 577 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 LRRC39Q96DD0 335 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 ZNF333Q96JL9 665 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 EBF4Q9BQW3 602 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 SLC4A5Q9BY07 1137 aa4.7□□□□□ -1.66
VPS13C-201ENST00000249837 PAIP1Q9H074 479 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 OLA1Q9NTK5 396 aaKnown RBP4.7□□□□□ -1.66
VPS13C-201ENST00000249837 MARF1Q9Y4F3 1742 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PLIN3O60664 434 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PIRTP0C851 137 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PCSK1P29120 753 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PTRHD1Q6GMV3 140 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 GK5Q6ZS86 529 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 C1orf127Q8N9H9 656 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 AGAP2Q99490 1192 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 NTPCRQ9BSD7 190 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TMEM216Q9P0N5 145 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MYPNQ86TC9 1320 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 BIRC5O15392 142 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 STRNO43815 780 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 H2AFYO75367 372 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TM7SF2O76062 418 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 FBXO21O94952 628 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ERCC2P18074 760 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CHRM3P20309 590 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PFKFB4Q16877 469 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 OTUD3Q5T2D3 398 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 STK32CQ86UX6 486 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 FAM228AQ86W67 206 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TDRPQ86YL5 185 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SNX19Q92543 992 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 FAR2Q96K12 515 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 QKIQ96PU8 341 aaKnown RBP eCLIP4.69□□□□□ -1.661e-6■■■■■ 50.7
VPS13C-201ENST00000249837 PEBP4Q96S96 227 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PRDM5Q9NQX1 630 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 EFR3BQ9Y2G0 817 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 AP4S1Q9Y587 144 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 DDX60Q8IY21 1712 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 HACD1B0YJ81 288 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC166P0CW27 439 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CRHR1P34998 444 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 GMPRP36959 345 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PRAMEF19Q5SWL8 479 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ARCQ7LC44 396 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MPP5Q8N3R9 675 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 FBXW8Q8N3Y1 598 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 NAT14Q8WUY8 206 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 KLHL25Q9H0H3 589 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MMADHCQ9H3L0 296 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MROH8Q9H579 483 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SLCO1B7G3V0H7 640 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TOP3BO95985 862 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 C2P06681 752 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CCNB1P14635 433 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ARF4P18085 180 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 THPOP40225 353 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 GRIA1P42261 906 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SLC7A2P52569 658 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ZBTB17Q13105 803 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SNAPC2Q13487 334 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 EMC10Q5UCC4 262 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 KIAA2013Q8IYS2 634 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 NAT8LQ8N9F0 302 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ANKRD52Q8NB46 1076 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 DDX1Q92499 740 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 FAM162AQ96A26 154 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PGLYRP2Q96PD5 576 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 EBF2Q9HAK2 575 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CCDC167Q9P0B6 97 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 VTI1BQ9UEU0 232 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PRKAG3Q9UGI9 489 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MYRFQ9Y2G1 1151 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 BCORQ6W2J9 1755 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SIN3BO75182 1162 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 F9P00740 461 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ITGB6P18564 788 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 NOMO1Q15155 1222 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 MTX3Q5HYI7 312 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SAMD4BQ5PRF9 694 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 LCLAT1Q6UWP7 414 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TFAP2DQ7Z6R9 452 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 TWNKQ96RR1 684 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CPNE1Q99829 537 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 GORASP1Q9BQQ3 440 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ASPSCR1Q9BZE9 553 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CHRAC1Q9NRG0 131 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 BDNFP23560 247 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 NAB1Q13506 487 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 LBRQ14739 615 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 C10orf120Q5SQS8 335 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PSTKQ8IV42 348 aaKnown RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CENPLQ8N0S6 344 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-201ENST00000249837 PQLC1Q8N2U9 271 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 SLC4A11Q8NBS3 891 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 CSPG4P5Q96PW8 444 aa4.69□□□□□ -1.66
VPS13C-201ENST00000249837 ATG2BQ96BY7 2078 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms