RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 GSTM1P09488 218 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 NPR3P17342 541 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 AKAP5P24588 427 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 HARS2P49590 506 aaKnown RBP10.62□□□□□ -0.71
VCL-201ENST00000211998 STARP49675 285 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 PTRHD1Q6GMV3 140 aaKnown RBP10.62□□□□□ -0.71
VCL-201ENST00000211998 CASP12Q6UXS9 341 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 TEKT5Q96M29 485 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 DEFB129Q9H1M3 183 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 ARMC7Q9H6L4 198 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 CXorf21Q9HAI6 301 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 VPS45Q9NRW7 570 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 PRPF19Q9UMS4 504 aaKnown RBP10.62□□□□□ -0.71
VCL-201ENST00000211998 WASF2Q9Y6W5 498 aa10.62□□□□□ -0.71
VCL-201ENST00000211998 WDR27A2RRH5 827 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ZSCAN5DPP0CG00 497 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PRKAR1AP10644 381 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ODC1P11926 461 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MYL4P12829 197 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 GARTP22102 1010 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RP9Q8TA86 221 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 SPPL2AQ8TCT8 520 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RCN3Q96D15 328 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 HPDLQ96IR7 371 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 DMRTB1Q96MA1 342 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 KIFC1Q9BW19 673 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SPASTQ9UBP0 616 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RAD54BQ9Y620 910 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 FRMPD1Q5SYB0 1578 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SPATA31A5Q5VU36 1347 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SPATA31A7Q8IWB4 1347 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PDLIM1O00151 329 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CD3EAPO15446 510 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 MAGEC1O60732 1142 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PMPCBO75439 489 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ABHD2P08910 425 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CNPP09543 421 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 ACAT1P24752 427 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 PEX2P28328 305 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 AQP4P55087 323 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ACVR2BQ13705 512 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SKIV2LQ15477 1246 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 ARHGAP15Q53QZ3 475 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ZNF484Q5JVG2 852 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 FNBP1LQ5T0N5 605 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MZT2AQ6P582 158 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 HPS6Q86YV9 775 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CLEC10AQ8IUN9 316 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 FBXO30Q8TB52 745 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RASSF5Q8WWW0 418 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RUSC1Q9BVN2 902 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 AAASQ9NRG9 546 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 WWOXQ9NZC7 414 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 C17orf102A2RUQ5 167 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CCDC162PA2VCL2 907 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ERCC2P18074 760 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MYL12AP19105 171 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MSH3P20585 1137 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MSX2P35548 267 aaPredicted RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 GTF2A2P52657 109 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 MGAT5BQ3V5L5 792 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RNF180Q86T96 592 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ATP6V0D2Q8N8Y2 350 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CERKQ8TCT0 537 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 BTBD9Q96Q07 612 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 NOL11Q9H8H0 719 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 MAN1C1Q9NR34 630 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 GPATCH2LQ9NWQ4 482 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 TBX20Q9UMR3 447 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ERCC6L2Q5T890 1561 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 A0A087X0B3 334 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 NDUFB5O43674 189 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SLC37A4O43826 429 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 VAPBO95292 243 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 HMBSP08397 361 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 STAG3L1P0CL83 205 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 FCGRTP55899 365 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PDK2Q15119 407 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RFWD3Q6PCD5 774 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 KLHDC10Q6PID8 442 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 FRMD7Q6ZUT3 714 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 SLC44A2Q8IWA5 706 aaPredicted RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 ATG4CQ96DT6 458 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 APOL2Q9BQE5 337 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RNF38Q9H0F5 515 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 IRF2BPLQ9H1B7 796 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 KIAA1257Q9ULG3 409 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PCDHGA10Q9Y5H3 936 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 GMPPBQ9Y5P6 360 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 STON1Q9Y6Q2 735 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 GRIN2DO15399 1336 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 ANXA9O76027 345 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 RFX5P48382 616 aaPredicted RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 HPCAP84074 193 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 PKN1Q16512 942 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 USP39Q53GS9 565 aaKnown RBP10.61□□□□□ -0.71
VCL-201ENST00000211998 FAM126BQ8IXS8 530 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 IZUMO1Q8IYV9 350 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 TPD52L3Q96J77 140 aa10.61□□□□□ -0.71
VCL-201ENST00000211998 CADM1Q9BY67 442 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms