RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FEM1AQ9BSK4 669 aa21.3■■□□□ 1
CLN3-240ENST00000631023 TMEM245Q9H330 911 aa21.3■■□□□ 1
CLN3-240ENST00000631023 SUN2Q9UH99 717 aa21.3■■□□□ 1
CLN3-240ENST00000631023 MUC22E2RYF6 1773 aaPredicted RBP21.29■■□□□ 1
CLN3-240ENST00000631023 EP300Q09472 2414 aaPredicted RBP21.29■■□□□ 1
CLN3-240ENST00000631023 CYP1A2P05177 515 aa21.29■■□□□ 1
CLN3-240ENST00000631023 SRPRAP08240 638 aaKnown RBP21.29■■□□□ 1
CLN3-240ENST00000631023 PRKCHP24723 683 aa21.29■■□□□ 1
CLN3-240ENST00000631023 MZF1P28698 734 aaPredicted RBP21.29■■□□□ 1
CLN3-240ENST00000631023 OR1E1P30953 314 aa21.29■■□□□ 1
CLN3-240ENST00000631023 NNMTP40261 264 aa21.29■■□□□ 1
CLN3-240ENST00000631023 BYSLQ13895 437 aaKnown RBP21.29■■□□□ 1
CLN3-240ENST00000631023 RWDD4Q6NW29 188 aaKnown RBP21.29■■□□□ 1
CLN3-240ENST00000631023 PRR23BQ6ZRT6 265 aa21.29■■□□□ 1
CLN3-240ENST00000631023 KDM1BQ8NB78 822 aa21.29■■□□□ 1
CLN3-240ENST00000631023 CTNNBL1Q8WYA6 563 aaPredicted RBP21.29■■□□□ 1
CLN3-240ENST00000631023 NUP85Q9BW27 656 aa21.29■■□□□ 1
CLN3-240ENST00000631023 TPSD1Q9BZJ3 242 aa21.29■■□□□ 1
CLN3-240ENST00000631023 MUC3BQ9H195 1237 aa21.29■■□□□ 1
CLN3-240ENST00000631023 FZD10Q9ULW2 581 aa21.29■■□□□ 1
CLN3-240ENST00000631023 NENFQ9UMX5 172 aa21.29■■□□□ 1
CLN3-240ENST00000631023 ERVW-1Q9UQF0 538 aa21.29■■□□□ 1
CLN3-240ENST00000631023 GON4LQ3T8J9 2241 aa21.29■■□□□ 1
CLN3-240ENST00000631023 GABRG2P18507 467 aa21.28■■□□□ 1
CLN3-240ENST00000631023 L1CAMP32004 1257 aa21.28■■□□□ 1
CLN3-240ENST00000631023 MRE11P49959 708 aa21.28■■□□□ 1
CLN3-240ENST00000631023 SRSF5Q13243 272 aaKnown RBP21.28■■□□□ 1
CLN3-240ENST00000631023 PIGHQ14442 188 aaPredicted RBP21.28■■□□□ 1
CLN3-240ENST00000631023 TFAP2DQ7Z6R9 452 aa21.28■■□□□ 1
CLN3-240ENST00000631023 C11orf74Q86VG3 221 aa21.28■■□□□ 1
CLN3-240ENST00000631023 TC2NQ8N9U0 490 aa21.28■■□□□ 1
CLN3-240ENST00000631023 TBC1D31Q96DN5 1066 aa21.28■■□□□ 1
CLN3-240ENST00000631023 TRIM7Q9C029 511 aa21.28■■□□□ 1
CLN3-240ENST00000631023 CD248Q9HCU0 757 aa21.28■■□□□ 1
CLN3-240ENST00000631023 VPS28Q9UK41 221 aa21.28■■□□□ 1
CLN3-240ENST00000631023 OTOGLQ3ZCN5 2332 aa21.28■■□□□ 1
CLN3-240ENST00000631023 PRR23AA6NEV1 266 aa21.27■■□□□ 1
CLN3-240ENST00000631023 PRPSAP2O60256 369 aa21.27■■□□□ 1
CLN3-240ENST00000631023 GFRA3O60609 400 aa21.27■■□□□ 1
CLN3-240ENST00000631023 LRIG2O94898 1065 aa21.27■■□□□ 1
CLN3-240ENST00000631023 H2AFZP0C0S5 128 aa21.27■■□□□ 1
CLN3-240ENST00000631023 ZNF252P-AS1Q0IIN9 211 aa21.27■■□□□ 1
CLN3-240ENST00000631023 MANEALQ5VSG8 457 aa21.27■■□□□ 1
CLN3-240ENST00000631023 ZNF783Q6ZMS7 281 aa21.27■■□□□ 1
CLN3-240ENST00000631023 H2AFVQ71UI9 128 aa21.27■■□□□ 1
CLN3-240ENST00000631023 SUMF1Q8NBK3 374 aa21.27■■□□□ 1
CLN3-240ENST00000631023 ALG14Q96F25 216 aa21.27■■□□□ 1
CLN3-240ENST00000631023 SPACA7Q96KW9 195 aa21.27■■□□□ 1
CLN3-240ENST00000631023 IP6K2Q9UHH9 426 aa21.27■■□□□ 1
CLN3-240ENST00000631023 SMG5Q9UPR3 1016 aaKnown RBP21.27■■□□□ 1
CLN3-240ENST00000631023 EIF3CLB5ME19 914 aaKnown RBP21.27■□□□□ 0.99
CLN3-240ENST00000631023 MYO1FO00160 1098 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 HLA-EP13747 358 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 RHOQP17081 205 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 KRT83P78385 493 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 CAMK2GQ13555 558 aaPredicted RBP21.27■□□□□ 0.99
CLN3-240ENST00000631023 ERMARDQ5T6L9 678 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 OR52K2Q8NGK3 314 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 ERLEC1Q96DZ1 483 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 EIF3CQ99613 913 aaKnown RBP21.27■□□□□ 0.99
CLN3-240ENST00000631023 EPAS1Q99814 870 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 C2orf49Q9BVC5 232 aaPredicted RBP21.27■□□□□ 0.99
CLN3-240ENST00000631023 FBRSQ9HAH7 460 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 SLC25A13Q9UJS0 675 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 ANAPC7Q9UJX3 599 aa21.27■□□□□ 0.99
CLN3-240ENST00000631023 ILVBLA1L0T0 632 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 FAM72CH0Y354 149 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 ZNF217O75362 1048 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 NDUFV2P19404 249 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 MIPP30301 263 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 PCK1P35558 622 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 CTSOP43234 321 aaPredicted RBP21.26■□□□□ 0.99
CLN3-240ENST00000631023 FAM72AQ5TYM5 149 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 FAM72DQ6L9T8 149 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 ASCL5Q7RTU5 278 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 ALYREFQ86V81 257 aaKnown RBP21.26■□□□□ 0.99
CLN3-240ENST00000631023 FAM72BQ86X60 149 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 ARFGAP1Q8N6T3 406 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 MRGPRX3Q96LB0 322 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 MRGPRX1Q96LB2 322 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 MAGEB5Q9BZ81 275 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 PRDM16Q9HAZ2 1276 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 CTTNBP2NLQ9P2B4 639 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 UVRAGQ9P2Y5 699 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 PCSK1NQ9UHG2 260 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 OR51B4Q9Y5P0 310 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 GPR179Q6PRD1 2367 aa21.26■□□□□ 0.99
CLN3-240ENST00000631023 WDR87Q6ZQQ6 2873 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 CREB3O43889 395 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 LRCH4O75427 683 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 HTR7P34969 479 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 ETFBP38117 255 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 MAPKAPK2P49137 400 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 ARTNQ5T4W7 220 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 TMPRSS6Q8IU80 811 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 PSTKQ8IV42 348 aaKnown RBP21.25■□□□□ 0.99
CLN3-240ENST00000631023 PYROXD2Q8N2H3 581 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 ZNF366Q8N895 744 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 OR2T3Q8NH03 318 aa21.25■□□□□ 0.99
CLN3-240ENST00000631023 ARHGEF26Q96DR7 871 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms