RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CYP2S1Q96SQ9 504 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ZCWPW1Q9H0M4 648 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 CCDC68Q9H2F9 335 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 HACD1B0YJ81 288 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 CCL16O15467 120 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ADAM7Q9H2U9 754 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 KCNU1A8MYU2 1149 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 SMAPO00193 183 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 PPM1AP35813 382 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 OXCT1P55809 520 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 CFAP157Q5JU67 520 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ITIH5Q86UX2 942 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ZNF567Q8N184 647 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ARL14EPQ8N8R7 260 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ERLEC1Q96DZ1 483 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 PGM2Q96G03 612 aa16.09■□□□□ 0.17
CPSF1-213ENST00000620219 ELAC1Q9H777 363 aaKnown RBP16.09■□□□□ 0.17
CPSF1-213ENST00000620219 OAZ2O95190 189 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 CYP11A1P05108 521 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 FAM133BQ5BKY9 247 aaKnown RBP16.08■□□□□ 0.17
CPSF1-213ENST00000620219 FAM171BQ6P995 826 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 EXT2Q93063 718 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 TCF25Q9BQ70 676 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 CINPQ9BW66 212 aaPredicted RBP16.08■□□□□ 0.17
CPSF1-213ENST00000620219 EPB41L4BQ9H329 900 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 OGDHLQ9ULD0 1010 aa16.08■□□□□ 0.17
CPSF1-213ENST00000620219 ANXA9O76027 345 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 PIRTP0C851 137 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 PSEN1P49768 467 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 C4orf22Q6V702 233 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 TMA16Q96EY4 203 aaKnown RBP16.08■□□□□ 0.16
CPSF1-213ENST00000620219 DDX50Q9BQ39 737 aaKnown RBP16.08■□□□□ 0.16
CPSF1-213ENST00000620219 CYBBP04839 570 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 SCNN1AP37088 669 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 SLCO2A1Q92959 643 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 PITPNM3Q9BZ71 974 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 A0A1W2PPM1 405 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 MT-CYBP00156 380 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-213ENST00000620219 SKOR1P84550 965 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 DSC1Q08554 894 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 PARP6Q2NL67 630 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 HSP90AA5PQ58FG0 334 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 RNF219Q5W0B1 726 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-213ENST00000620219 DRICH1Q6PGQ1 229 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-213ENST00000620219 NDUFAF2Q8N183 169 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 PKNOX2Q96KN3 472 aa16.08■□□□□ 0.16
CPSF1-213ENST00000620219 UBA6A0AVT1 1052 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 BCLAF3A2AJT9 711 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 CHADO15335 359 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 ADH1AP07327 375 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 ERVK-10P10266 1014 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 CORO1AP31146 461 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 CYP4F8P98187 520 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 FPGSQ05932 587 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 DNAJC3Q13217 504 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 C14orf80Q86SX3 495 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 VSIG1Q86XK7 387 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 CCDC197Q8NCU1 140 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 PPHLN1Q8NEY8 458 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 RILPQ96NA2 401 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 SLC9A7Q96T83 725 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 EMILIN2Q9BXX0 1053 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 UNKQ9C0B0 810 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 YIPF1Q9Y548 306 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 FAM47DPA6NHR8 397 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 EN2P19622 333 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 PAPOLAP51003 745 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 TXNDC8Q6A555 127 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 TIGD7Q6NT04 549 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 DNAJB7Q7Z6W7 309 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 LZTR1Q8N653 840 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 PTPRN2Q92932 1015 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 BTN2A3PQ96KV6 586 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 PAK6Q9NQU5 681 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 DCTN4Q9UJW0 460 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 TRPM7Q96QT4 1865 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 TTC24A2A3L6 582 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 KITP10721 976 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 RENBPP51606 427 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 RPS24P62847 133 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 NR1H3Q13133 447 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 SETDB1Q15047 1291 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 QKIQ96PU8 341 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 WBP1LQ9NX94 342 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 KLHL14Q9P2G3 628 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 AAR2Q9Y312 384 aaKnown RBP16.07■□□□□ 0.16
CPSF1-213ENST00000620219 NUP205Q92621 2012 aa16.07■□□□□ 0.16
CPSF1-213ENST00000620219 FAM155BO75949 473 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 F7P08709 466 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 CXCR3P49682 368 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 MCCD1P59942 119 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 SLC2A13Q96QE2 648 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 IARS2Q9NSE4 1012 aaKnown RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FIS1Q9Y3D6 152 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 ALOX15BO15296 676 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FGF10O15520 208 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 FGF18O76093 207 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 SNRPAP09012 282 aaKnown RBP16.06■□□□□ 0.16
CPSF1-213ENST00000620219 PAMP19021 973 aa16.06■□□□□ 0.16
CPSF1-213ENST00000620219 ALDH3A1P30838 453 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms