RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FGGP02679 453 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 GJA4P35212 333 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 EIF2DP41214 584 aaKnown RBP14.73□□□□□ -0.05
UPF1-211ENST00000600868 DYNLT1P63172 113 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 PFKPQ01813 784 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 SLC12A1Q13621 1099 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 CXorf57Q6NSI4 855 aaKnown RBP14.73□□□□□ -0.05
UPF1-211ENST00000600868 BZW1Q7L1Q6 419 aaKnown RBP14.73□□□□□ -0.05
UPF1-211ENST00000600868 NPWQ8N729 165 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 WFDC5Q8TCV5 224 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 MAGEH1Q9H213 219 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 NOL6Q9H6R4 1146 aaKnown RBP14.73□□□□□ -0.05
UPF1-211ENST00000600868 LRRC19Q9H756 370 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 KIAA1522Q9P206 1035 aaPredicted RBP14.73□□□□□ -0.05
UPF1-211ENST00000600868 CLEC4EQ9ULY5 219 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 COL6A3P12111 3177 aa14.73□□□□□ -0.05
UPF1-211ENST00000600868 COL4A3Q01955 1670 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 TCRBV7S2A1N4TA0A589 114 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 MFSD11O43934 449 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 RAMP2O60895 175 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 URI1O94763 535 aaPredicted RBP14.72□□□□□ -0.05
UPF1-211ENST00000600868 RHOCP08134 193 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 ETFBP38117 255 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 GNA12Q03113 381 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 GBE1Q04446 702 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 POLD3Q15054 466 aaPredicted RBP14.72□□□□□ -0.05
UPF1-211ENST00000600868 LONRF2Q1L5Z9 754 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 PARP15Q460N3 678 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 FSCBQ5H9T9 825 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 CCDC181Q5TID7 509 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 C1orf228Q6PIY5 440 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 KIAA0907Q7Z7F0 614 aaPredicted RBP14.72□□□□□ -0.05
UPF1-211ENST00000600868 LRRC49Q8IUZ0 686 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 ARHGAP12Q8IWW6 846 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.72□□□□□ -0.05
UPF1-211ENST00000600868 NAT16Q8N8M0 369 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 TTC13Q8NBP0 860 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 P3H4Q92791 437 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 LMLNQ96KR4 655 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 C8orf33Q9H7E9 229 aaPredicted RBP14.72□□□□□ -0.05
UPF1-211ENST00000600868 DTLQ9NZJ0 730 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 CDC23Q9UJX2 597 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 DUSP12Q9UNI6 340 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 SORCS3Q9UPU3 1222 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 SLC27A6Q9Y2P4 619 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 COL4A2P08572 1712 aa14.72□□□□□ -0.05
UPF1-211ENST00000600868 TICRRQ7Z2Z1 1910 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 ARHGAP42A6NI28 874 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 RASA4BC9J798 803 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 NCAM2O15394 837 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 RASA4O43374 803 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 NARSO43776 548 aaKnown RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 TULP3O75386 442 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 CISD3P0C7P0 127 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 GLULP15104 373 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 HLA-FP30511 346 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 OPRD1P41143 372 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 PAFAH1B1P43034 410 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 PLK1P53350 603 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 GALNT2Q10471 571 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 LMAN2Q12907 356 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 SLC10A2Q12908 348 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 DMC1Q14565 340 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 SIX1Q15475 284 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 PREPLQ4J6C6 727 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 RNF219Q5W0B1 726 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 ASTLQ6HA08 431 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 NPNTQ6UXI9 565 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 C12orf40Q86WS4 652 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 OR52K2Q8NGK3 314 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 TTC8Q8TAM2 541 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 ACTL9Q8TC94 416 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 ARHGEF2Q92974 986 aaKnown RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 CHFRQ96EP1 664 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 ALG14Q96F25 216 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 CELF6Q96J87 481 aaKnown RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 CAPZA3Q96KX2 299 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 OLFM3Q96PB7 478 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 FEM1AQ9BSK4 669 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 FRMD8P1Q9BZ68 369 aaPredicted RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 SLC39A8Q9C0K1 460 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 DNAJC17Q9NVM6 304 aaKnown RBP14.71□□□□□ -0.05
UPF1-211ENST00000600868 DEC1Q9P2X7 70 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 HEY1Q9Y5J3 304 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 OR51B4Q9Y5P0 310 aa14.71□□□□□ -0.05
UPF1-211ENST00000600868 CHD5Q8TDI0 1954 aa14.71□□□□□ -0.06
UPF1-211ENST00000600868 A0A0D9SEW6 157 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 PABPC1P11940 636 aaKnown RBP14.7□□□□□ -0.06
UPF1-211ENST00000600868 PECAM1P16284 738 aaPredicted RBP14.7□□□□□ -0.06
UPF1-211ENST00000600868 MX2P20592 715 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 MZF1P28698 734 aaPredicted RBP14.7□□□□□ -0.06
UPF1-211ENST00000600868 CD70P32970 193 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 CSKP41240 450 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 SLC6A11P48066 632 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 DGKGP49619 791 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 OTUD4Q01804 1114 aaKnown RBP14.7□□□□□ -0.06
UPF1-211ENST00000600868 XRCC4Q13426 336 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 PDK1Q15118 436 aa14.7□□□□□ -0.06
UPF1-211ENST00000600868 NOMO1Q15155 1222 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms