RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ATP11AP98196 1134 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 SCAPQ12770 1279 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 SRSF5Q13243 272 aaKnown RBP16.67■□□□□ 0.26
LSM4-206ENST00000600289 STARD3Q14849 445 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 USP39Q53GS9 565 aaKnown RBP16.67■□□□□ 0.26
LSM4-206ENST00000600289 PITRM1Q5JRX3 1037 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 CXorf57Q6NSI4 855 aaKnown RBP16.67■□□□□ 0.26
LSM4-206ENST00000600289 KIAA1211LQ6NV74 962 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 PHLDB2Q86SQ0 1253 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 VPS36Q86VN1 386 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 FAM131BQ86XD5 332 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 VSTM4Q8IW00 320 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 FAM172AQ8WUF8 416 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 LOXL4Q96JB6 756 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 MCEEQ96PE7 176 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 CNPY3Q9BT09 278 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 TMEM121BQ9BXQ6 578 aaPredicted RBP16.67■□□□□ 0.26
LSM4-206ENST00000600289 RETREG1Q9H6L5 497 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 RAB23Q9ULC3 237 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 TBC1D30Q9Y2I9 924 aa16.67■□□□□ 0.26
LSM4-206ENST00000600289 WASH3PC4AMC7 463 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 MOCS3O95396 460 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 FTLP02792 175 aaPredicted RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 SRPRAP08240 638 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 PRKCHP24723 683 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 ADRA1BP35368 520 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 P2RY2P41231 377 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 CSKP41240 450 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 VASPP50552 380 aaPredicted RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 IRAK1P51617 712 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 AIF1P55008 147 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 RPL7AP62424 266 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 MAMLD1Q13495 774 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 BYSLQ13895 437 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 CDO1Q16878 200 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 PLEKHG6Q3KR16 790 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 ARL13BQ3SXY8 428 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 TDRD12Q587J7 1177 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 SH3PXD2AQ5TCZ1 1133 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 SERPINA13PQ6UXR4 307 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 LRRC31Q6UY01 552 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 CEP68Q76N32 757 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 C14orf80Q86SX3 495 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 METTL3Q86U44 580 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 FNIP1Q8TF40 1166 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 CPLX3Q8WVH0 158 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 HMGB4Q8WW32 186 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 SORCS1Q8WY21 1168 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 MYO19Q96H55 970 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 PPP1R9BQ96SB3 815 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 DNAJC7Q99615 494 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 SIK2Q9H0K1 926 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 OSBPL2Q9H1P3 480 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 FBRSQ9HAH7 460 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 PPARGC1AQ9UBK2 798 aaKnown RBP16.66■□□□□ 0.26
LSM4-206ENST00000600289 PLA2G4CQ9UP65 541 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 RAD54BQ9Y620 910 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 SCINQ9Y6U3 715 aa16.66■□□□□ 0.26
LSM4-206ENST00000600289 TMCO5BA8MYB1 307 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 E9PAM4 449 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 CCP110O43303 1012 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 NDUFV2P19404 249 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 GGCXP38435 758 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 CAMK2GQ13555 558 aaPredicted RBP16.65■□□□□ 0.26
LSM4-206ENST00000600289 MANEALQ5VSG8 457 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 DCUN1D2Q6PH85 259 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 PRR23BQ6ZRT6 265 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 CIR1Q86X95 450 aaPredicted RBP16.65■□□□□ 0.26
LSM4-206ENST00000600289 ALG14Q96F25 216 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 MRGPRX3Q96LB0 322 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 TPSD1Q9BZJ3 242 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 TMPRSS4Q9NRS4 437 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 BCCIPQ9P287 314 aaKnown RBP eCLIP16.65■□□□□ 0.26
LSM4-206ENST00000600289 ARHGAP20Q9P2F6 1191 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 NENFQ9UMX5 172 aa16.65■□□□□ 0.26
LSM4-206ENST00000600289 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 ZBTB24O43167 697 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 ZNF217O75362 1048 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 DESP17661 470 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 SULT2A1Q06520 285 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 ZNF177Q13360 481 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 MAP7D1Q3KQU3 841 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 PLK5Q496M5 336 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 FNDC3BQ53EP0 1204 aaKnown RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 RAB6CQ53S08 254 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 SETD3Q86TU7 594 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 FAM160A2Q8N612 972 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 CYB5D2Q8WUJ1 264 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 SPACA7Q96KW9 195 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 MRGPRX1Q96LB2 322 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 RAB6CQ9H0N0 254 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 DUSP15Q9H1R2 295 aaPredicted RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 MRPL47Q9HD33 250 aaKnown RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 ZNF212Q9UDV6 495 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 CNOT8Q9UFF9 292 aaKnown RBP16.64■□□□□ 0.25
LSM4-206ENST00000600289 ADAMTS1Q9UHI8 967 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 OR51B4Q9Y5P0 310 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 LAMA5O15230 3695 aa16.64■□□□□ 0.25
LSM4-206ENST00000600289 TMEM191CA6NGB0 347 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms