RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TSTD1Q8NFU3 115 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 CCDC42Q96M95 316 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 SNRNP25Q9BV90 132 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 ZYG11BQ9C0D3 744 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 GPATCH2LQ9NWQ4 482 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 ANAPC7Q9UJX3 599 aa20.06■□□□□ 0.8
SHKBP1-221ENST00000599833 A0A0D9SEW6 157 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 PCK1P35558 622 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 COPAP53621 1224 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 NRLP54845 237 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 SLC25A11Q02978 314 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 ACAP1Q15027 740 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 TXNRD3NBQ6F5E7 133 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 TFAP2DQ7Z6R9 452 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 SUMF1Q8NBK3 374 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 DEF6Q9H4E7 631 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 NOL6Q9H6R4 1146 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 OSGEPQ9NPF4 335 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 TMEM248Q9NWD8 314 aa20.05■□□□□ 0.8
SHKBP1-221ENST00000599833 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 MTA2O94776 668 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 H2AFZP0C0S5 128 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 HLA-EP13747 358 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 RHOQP17081 205 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 POLR2EP19388 210 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 PLA2G5P39877 138 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 VASPP50552 380 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ZNF177Q13360 481 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 TCEAL1Q15170 157 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 TSR1Q2NL82 804 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ANO7Q6IWH7 933 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 LRRC31Q6UY01 552 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 H2AFVQ71UI9 128 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 SETD3Q86TU7 594 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ABCA7Q8IZY2 2146 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ZNF366Q8N895 744 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 KDM1BQ8NB78 822 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ZNF564Q8TBZ8 553 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 UCMAQ8WVF2 138 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 TBC1D31Q96DN5 1066 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 MKRN2Q9H000 416 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 SLC6A17Q9H1V8 727 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 EPC1Q9H2F5 836 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 UVRAGQ9P2Y5 699 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 PCSK1NQ9UHG2 260 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 USP18Q9UMW8 372 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 ERVW-1Q9UQF0 538 aa20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 RIF1Q5UIP0 2472 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-221ENST00000599833 NUP205Q92621 2012 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 TCRBV21S2A2A0A5A6 115 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 AXIN1O15169 862 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 ZMPSTE24O75844 475 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 ASLP04424 464 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 NDUFV2P19404 249 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 STK19P49842 368 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 CAMK2GQ13555 558 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 PIGHQ14442 188 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 EFHC2Q5JST6 749 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 RNF219Q5W0B1 726 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 RAD9BQ6WBX8 426 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 ERLEC1Q96DZ1 483 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 KCTD15Q96SI1 283 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 TPSD1Q9BZJ3 242 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 MTG2Q9H4K7 406 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 RETREG1Q9H6L5 497 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 POLMQ9NP87 494 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 CD93Q9NPY3 652 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 SLCO3A1Q9UIG8 710 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 AP4E1Q9UPM8 1137 aa20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 REXO2Q9Y3B8 237 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-221ENST00000599833 TNRC6BQ9UPQ9 1833 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ILVBLA1L0T0 632 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 SOWAHDA6NJG2 315 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 WASH4PA8MWX3 477 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ATP5BP06576 529 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 RHOCP08134 193 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 SRPRAP08240 638 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ECT2LQ008S8 904 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ERMARDQ5T6L9 678 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 SERPINA13PQ6UXR4 307 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ASCL5Q7RTU5 278 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 PSTKQ8IV42 348 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 OR7D4Q8NG98 312 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 FRS2Q8WU20 508 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 CTNNBL1Q8WYA6 563 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 MRGPRX1Q96LB2 322 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 KLC2Q9H0B6 622 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 IMPACTQ9P2X3 320 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 IP6K2Q9UHH9 426 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 INTUQ9ULD6 942 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 TFR2Q9UP52 801 aa20.02■□□□□ 0.8
SHKBP1-221ENST00000599833 EP300Q09472 2414 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 GVINP1Q7Z2Y8 2422 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 TTC34A8MYJ7 566 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 SNAP91O60641 907 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 RNF8O76064 485 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 PROSCO94903 275 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 CD160O95971 181 aa20.01■□□□□ 0.79
SHKBP1-221ENST00000599833 GLDCP23378 1020 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms