RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ARHGEF38Q9NXL2 777 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 RASAL2Q9UJF2 1139 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 FZD10Q9ULW2 581 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 TLR6Q9Y2C9 796 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 COL12A1Q99715 3063 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 NOTCH4Q99466 2003 aa9.77□□□□□ -0.85
TRIM28-208ENST00000597172 CCDC66A2RUB6 948 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 CTAGE9A4FU28 777 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 C3orf70A6NLC5 250 aaPredicted RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 MIF4GDA9UHW6 222 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF197O14709 1029 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PSTPIP1O43586 416 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PRPSAP2O60256 369 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 GREM1O60565 184 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SRGAP2O75044 1071 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 HMBSP08397 361 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PYGMP11217 842 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PRLRP16471 622 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 CEBPBP17676 345 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 IL4RP24394 825 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 CXCR5P32302 372 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 DNA2P51530 1060 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 TBX4P57082 545 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SLC7A9P82251 487 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 CREB5Q02930 508 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 NNTQ13423 1086 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 LRRC32Q14392 662 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 HADHQ16836 314 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SMTNL2Q2TAL5 461 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PLK5Q496M5 336 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 GPR158Q5T848 1215 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 DCAF12L1Q5VU92 463 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 AADACL2Q6P093 401 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 POLNQ7Z5Q5 900 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 TADA2BQ86TJ2 420 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 KATNAL2Q8IYT4 538 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PYROXD2Q8N2H3 581 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 LSM14AQ8ND56 463 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 MDM1Q8TC05 714 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 FAM71BQ8TC56 605 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 TEKT4Q8WW24 435 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF592Q92610 1267 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 NTAN1Q96AB6 310 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SERPINB11Q96P15 392 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PSMB7Q99436 277 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SNRNP25Q9BV90 132 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 TKTL2Q9H0I9 626 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 WDCPQ9H6R7 721 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 TRPC7Q9HCX4 862 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 RRAGDQ9NQL2 400 aaPredicted RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 RBM12Q9NTZ6 932 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 XPO7Q9UIA9 1087 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 SNX12Q9UMY4 172 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 HBS1LQ9Y450 684 aaKnown RBP9.76□□□□□ -0.85
TRIM28-208ENST00000597172 PIAS3Q9Y6X2 628 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 NUP205Q92621 2012 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 LRRK2Q5S007 2527 aa9.76□□□□□ -0.85
TRIM28-208ENST00000597172 MYO16Q9Y6X6 1858 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 TRAV19A0A0A6YYK7 116 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 BCLAF3A2AJT9 711 aaKnown RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 FAM72CH0Y354 149 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KCNK3O14649 394 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KHNYNO15037 678 aaKnown RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF185O15231 689 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 STC2O76061 302 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KLKB1P03952 638 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KRT7P08729 469 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 CD48P09326 243 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 MBL2P11226 248 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 PFKLP17858 780 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KDELR1P24390 212 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 DDX6P26196 483 aaKnown RBP eCLIP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 L1CAMP32004 1257 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 CCR1P32246 355 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 GJC1P36383 396 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 RWDD2BP57060 319 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 COG7P83436 770 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 ZNF211Q13398 564 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 BRMS1LQ5PSV4 323 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 FAM72AQ5TYM5 149 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 TANGO2Q6ICL3 276 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 FAM72DQ6L9T8 149 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 MFSD7Q6UXD7 560 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 Q6ZS52 159 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 SND1Q7KZF4 910 aaKnown RBP eCLIP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 RAB44Q7Z6P3 723 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 FAM72BQ86X60 149 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 NPAS3Q8IXF0 933 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 RCOR2Q8IZ40 523 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 CMTM8Q8IZV2 173 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 UBL4BQ8N7F7 174 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 COG1Q8WTW3 980 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 ING5Q8WYH8 240 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 HSPH1Q92598 858 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 RNF34Q969K3 372 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 RNF25Q96BH1 459 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 GCNAQ96QF7 691 aa9.75□□□□□ -0.85
TRIM28-208ENST00000597172 KCTD15Q96SI1 283 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-208ENST00000597172 OSBPL9Q96SU4 736 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms