RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 FAM84BQ96KN1 310 aaPredicted RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PPP1R10Q96QC0 940 aaKnown RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 ZNF347Q96SE7 839 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 ABHD14AQ9BUJ0 271 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 PRDM16Q9HAZ2 1276 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 GEMIN8Q9NWZ8 242 aaKnown RBP4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 SLC8A2Q9UPR5 921 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 MAST1Q9Y2H9 1570 aa4.59□□□□□ -1.67
SMCHD1-208ENST00000583344 FAM135AQ9P2D6 1515 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 ADGRL1O94910 1474 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 CCDC141Q6ZP82 1450 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 LMTK3Q96Q04 1460 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 ERBINQ96RT1 1412 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 OR2W5A6NFC9 320 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 PPP6R2O75170 966 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 EIF3JO75822 258 aaKnown RBP4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 GABRB3P28472 473 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 MLH1P40692 756 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 LTBQ06643 244 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 SLC5A9Q2M3M2 681 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 ZNF628Q5EBL2 1059 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 USP17L6PQ6QN14 398 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 TRILQ7L0X0 811 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 KRT27Q7Z3Y8 459 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 GPSM1Q86YR5 675 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 FAM47BQ8NA70 645 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 CENPIQ92674 756 aaPredicted RBP4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 C8orf48Q96LL4 319 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 SPAG4Q9NPE6 437 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 PRDM11Q9NQV5 511 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 SIRT3Q9NTG7 399 aaPredicted RBP4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 MYO1AQ9UBC5 1043 aa4.58□□□□□ -1.68
SMCHD1-208ENST00000583344 CCDC144AA2RUR9 1427 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 EIF3AQ14152 1382 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 A0A1W2PPC4 97 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 MDM4O15151 490 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 PLIN1O60240 522 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 CNTN5O94779 1100 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 VIPP01282 170 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 IFNA2P01563 188 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 ACAA1P09110 424 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 PPP2R1AP30153 589 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 SLC37A1P57057 533 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 BIRC2Q13490 618 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 NFATC4Q14934 902 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 USP43Q70EL4 1123 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 CTU1Q7Z7A3 348 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 OR52N4Q8NGI2 321 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 NPIPB3Q92617 1050 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 KAT2AQ92830 837 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 SNX27Q96L92 541 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 MAP6D1Q9H9H5 199 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 TXLNGQ9NUQ3 528 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 FBXO28Q9NVF7 368 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 MYO6Q9UM54 1294 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 EIF2AK4Q9P2K8 1649 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 UNC13BO14795 1591 aa4.57□□□□□ -1.68
SMCHD1-208ENST00000583344 A2MP01023 1474 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 WDR7Q9Y4E6 1490 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 PIK3C2GO75747 1445 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 SCAPERQ9BY12 1400 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 DISP3Q9P2K9 1392 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 NPC1O15118 1278 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 DHHO43323 396 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 NFATC1O95644 943 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 SRGAP2BP0DMP2 458 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 FGF3P11487 239 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 EGR1P18146 543 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 ATF3P18847 181 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 RFX2P48378 723 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 CASP5P51878 434 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 RHBDL3P58872 404 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 CBFBQ13951 182 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 KEAP1Q14145 624 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 C20orf194Q5TEA3 1177 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 MSANTD2Q6P1R3 559 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 PDXDC1Q6P996 788 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 SLC39A5Q6ZMH5 540 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 BEND5Q7L4P6 421 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 SMC5Q8IY18 1101 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 C7orf57Q8NEG2 295 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 CLMNQ96JQ2 1002 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 FSCN3Q9NQT6 498 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 MDFICQ9P1T7 246 aa4.56□□□□□ -1.68
SMCHD1-208ENST00000583344 EVPLQ92817 2033 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 IQGAP3Q86VI3 1631 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 PAPSS2O95340 614 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 TGM2P21980 687 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 MT3P25713 68 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 STT3AP46977 705 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 ENTPD1P49961 510 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 SLC4A8Q2Y0W8 1093 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 INO80DQ53TQ3 878 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 WASHC2DQ5SRD0 308 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 CCSAPQ6IQ19 270 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 RBM23Q86U06 439 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 NR2C2APQ86WQ0 139 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 SLC22A17Q8WUG5 538 aa4.55□□□□□ -1.68
SMCHD1-208ENST00000583344 URB1-AS1Q96HZ7 61 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms