RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 ADGRF3Q8IZF5 1079 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 TXLNBQ8N3L3 684 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 PARD3BQ8TEW8 1205 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 NPIPB3Q92617 1050 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 CCDC136Q96JN2 1154 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 PCDHAC1Q9H158 963 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 STARD7Q9NQZ5 370 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 TMOD4Q9NZQ9 345 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 ZMYND8Q9ULU4 1186 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 MAN2B2Q9Y2E5 1009 aa3.81□□□□□ -1.8
SMCHD1-206ENST00000581631 ZSCAN9O15535 394 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 PECAM1P16284 738 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 TNFSF4P23510 183 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 GABRB3P28472 473 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 ARL13BQ3SXY8 428 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 ARHGAP15Q53QZ3 475 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 HSP90AB2PQ58FF8 381 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 FAM209BQ5JX69 171 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 DCAF12L2Q5VW00 463 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 WBP2NLQ6ICG8 309 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 CYB5R4Q7L1T6 521 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 SNX27Q96L92 541 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 PKP4Q99569 1192 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 NUDT22Q9BRQ3 303 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 COLEC11Q9BWP8 271 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 PRDM16Q9HAZ2 1276 aa3.8□□□□□ -1.8
SMCHD1-206ENST00000581631 FAM234BA2RU67 622 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 KRT36O76013 467 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 NBPF7P0C2Y1 421 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 IDEP14735 1019 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 IGFBP2P18065 325 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 GSTM5P46439 218 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 ZP1P60852 638 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 DSC1Q08554 894 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 TRAF3Q13114 568 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 RBM39Q14498 530 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 SLC35G1Q2M3R5 365 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 DNTTIP2Q5QJE6 756 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 OTUD1Q5VV17 481 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 MSANTD2Q6P1R3 559 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 USP17L6PQ6QN14 398 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 Q6ZSV7 163 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 CREB3L2Q70SY1 520 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 GLIS1Q8NBF1 620 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 GRAMD1AQ96CP6 724 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 RIPOR3Q96MK2 946 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 PAAF1Q9BRP4 392 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 PNRC2Q9NPJ4 139 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 SLC8A2Q9UPR5 921 aa3.79□□□□□ -1.8
SMCHD1-206ENST00000581631 ANO9A1A5B4 782 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 DENND3A2RUS2 1198 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 CXorf65A6NEN9 183 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 SERINC4A6NH21 518 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RASA4BC9J798 803 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RASA4O43374 803 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 CAND2O75155 1236 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 NFATC1O95644 943 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 PRSS2P07478 247 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 SP1P08047 785 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 CHRNB2P17787 502 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 EGR1P18146 543 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 NEK3P51956 506 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 PMS2P54278 862 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 PMPCAQ10713 525 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 HLTFQ14527 1009 aaKnown RBP eCLIP3.78□□□□□ -1.83e-6■■□□□ 11.8
SMCHD1-206ENST00000581631 SF3B4Q15427 424 aaKnown RBP eCLIP3.78□□□□□ -1.84e-11■■■■■ 38.3
SMCHD1-206ENST00000581631 SLC5A9Q2M3M2 681 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 P3H1Q32P28 736 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 IL31Q6EBC2 164 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 FBXO38Q6PIJ6 1188 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RFLNBQ8N5W9 214 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 OR2C3Q8N628 320 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 PMM1Q92871 262 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RNF146Q9NTX7 359 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 GEMIN8Q9NWZ8 242 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RGL1Q9NZL6 768 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 RAI2Q9Y5P3 530 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 LMTK3Q96Q04 1460 aa3.78□□□□□ -1.8
SMCHD1-206ENST00000581631 PRC1O43663 620 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 FGF18O76093 207 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 VIPP01282 170 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 KRT18P05783 430 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 LCKP06239 509 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 SRGAP2BP0DMP2 458 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 ITGB8P26012 769 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 EEF1GP26641 437 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 TM4SF4P48230 202 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 SHC2P98077 582 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 HNF4GQ14541 408 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 TDRD12Q587J7 1177 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 MDGA2Q7Z553 956 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 DPP9Q86TI2 863 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 ZNF566Q969W8 418 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 RTP4Q96DX8 246 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 INPP4AQ96PE3 977 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 GDF15Q99988 308 aa3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-206ENST00000581631 IL25Q9H293 177 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms