RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 RTN2O75298 545 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 CSO75390 466 aaKnown RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 IGLV3-27P01718 113 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 CKMT1AP12532 417 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 KRT10P13645 584 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 DGKAP23743 735 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 MZF1P28698 734 aaPredicted RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 DRD3P35462 400 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 TBX4P57082 545 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 BST2Q10589 180 aaKnown RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 KIAA1614Q5VZ46 1190 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 NADSYN1Q6IA69 706 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 MSANTD2Q6P1R3 559 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 UBA3Q8TBC4 463 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 SEMA4DQ92854 862 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 MYEOVQ96EZ4 313 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 RPL10LQ96L21 214 aaKnown RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 PRICKLE1Q96MT3 831 aaPredicted RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 ZNF396Q96N95 335 aaPredicted RBP13.18□□□□□ -0.3
SS18-219ENST00000581570 PHF12Q96QT6 1004 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
SS18-219ENST00000581570 ABCG4Q9H172 646 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 OSBPL2Q9H1P3 480 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 ASCL3Q9NQ33 180 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 CNGB3Q9NQW8 809 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 UCKL1Q9NWZ5 548 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 FAM13BQ9NYF5 915 aa13.18□□□□□ -0.3
SS18-219ENST00000581570 A0A1B0GVM2 712 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 PRAMEF26H0Y7S4 382 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 K7ENP7 123 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 PLRG1O43660 514 aaKnown RBP13.17□□□□□ -0.3
SS18-219ENST00000581570 YEATS4O95619 227 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 LCP1P13796 627 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 NNMTP40261 264 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 CSRP3P50461 194 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 DAOAP59103 153 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 ELAVL3Q14576 367 aaKnown RBP13.17□□□□□ -0.3
SS18-219ENST00000581570 POM121L1PQ3SYA9 428 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 SGO2Q562F6 1265 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 KRT39Q6A163 491 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 INO80CQ6PI98 192 aaPredicted RBP13.17□□□□□ -0.3
SS18-219ENST00000581570 PRICKLE2Q7Z3G6 844 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 TRIM69Q86WT6 500 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 FAM186BQ8IYM0 893 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 CEP57L1Q8IYX8 460 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 CFAP52Q8N1V2 620 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 SCML4Q8N228 414 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 KCTD13Q8WZ19 329 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 UPF2Q9HAU5 1272 aaKnown RBP13.17□□□□□ -0.3
SS18-219ENST00000581570 KLHL11Q9NVR0 708 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 TRAF3IP3Q9Y228 551 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 CA5BQ9Y2D0 317 aa13.17□□□□□ -0.3
SS18-219ENST00000581570 COL6A6A6NMZ7 2263 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 SLC7A4O43246 635 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 GABBR2O75899 941 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 LUC7L3O95232 432 aaKnown RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 GP1BAP07359 652 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 ALPPL2P10696 532 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 MYF5P13349 255 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 CD19P15391 556 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 NR2F2P24468 414 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 RBMS1P29558 406 aaKnown RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 GTF2H1P32780 548 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 STK19P49842 368 aaPredicted RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 DUSP3P51452 185 aaPredicted RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 METAP1P53582 386 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 ENPEPQ07075 957 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 KCNMA1Q12791 1236 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 SETMARQ53H47 684 aaPredicted RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 DCAF6Q58WW2 860 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 MS4A13Q5J8X5 152 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 ERICH6BQ5W0A0 696 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 APCDD1Q8J025 514 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 FAM131CQ96AQ9 280 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 CCDC97Q96F63 343 aaPredicted RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 APOLD1Q96LR9 279 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 SPAG5Q96R06 1193 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 NUCKS1Q9H1E3 243 aaKnown RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 RAB20Q9NX57 234 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 IL17BQ9UHF5 180 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 SERTAD1Q9UHV2 236 aa13.16□□□□□ -0.3
SS18-219ENST00000581570 TP53BP1Q12888 1972 aaPredicted RBP13.16□□□□□ -0.3
SS18-219ENST00000581570 MYO18BQ8IUG5 2567 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 RNGTTO60942 597 aaKnown RBP13.15□□□□□ -0.3
SS18-219ENST00000581570 THEGLP0DJG4 465 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 GIMD1P0DJR0 217 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 SETSIPP0DME0 302 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 VAV1P15498 845 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 PSMC2P35998 433 aaKnown RBP13.15□□□□□ -0.3
SS18-219ENST00000581570 NFIL3Q16649 462 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 C3orf38Q5JPI3 329 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 FAM46CQ5VWP2 391 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 IGF2-ASQ6U949 168 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 CCDC81Q6ZN84 652 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 DSG4Q86SJ6 1040 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 FBXL13Q8NEE6 735 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 MAPK15Q8TD08 544 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 OR8D1Q8WZ84 308 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 IRGQQ8WZA9 623 aa13.15□□□□□ -0.3
SS18-219ENST00000581570 PAGE5Q96GU1 130 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms