RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PRSS16Q9NQE7 514 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 PARVAQ9NVD7 372 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 TMEM51Q9NW97 253 aa20.7■□□□□ 0.9
SS18-218ENST00000581021 CNOT8Q9UFF9 292 aaKnown RBP20.7■□□□□ 0.9
SS18-218ENST00000581021 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.7■□□□□ 0.9
SS18-218ENST00000581021 BZW2Q9Y6E2 419 aaKnown RBP20.7■□□□□ 0.9
SS18-218ENST00000581021 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.69■□□□□ 0.9
SS18-218ENST00000581021 IGHV1OR15-9A0A0B4J2B8 117 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 TMEM191CA6NGB0 347 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 TTC34A8MYJ7 566 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 SYNCRIPO60506 623 aaKnown RBP20.69■□□□□ 0.9
SS18-218ENST00000581021 EPN2O95208 641 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 ASLP04424 464 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 ECT2LQ008S8 904 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 SCAPQ12770 1279 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 ZNF177Q13360 481 aaPredicted RBP20.69■□□□□ 0.9
SS18-218ENST00000581021 ARID5BQ14865 1188 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 CCDC6Q16204 474 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 SARM1Q6SZW1 724 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 TMC6Q7Z403 805 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 TMPRSS6Q8IU80 811 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 PYROXD2Q8N2H3 581 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 RPL10LQ96L21 214 aaKnown RBP20.69■□□□□ 0.9
SS18-218ENST00000581021 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.69■□□□□ 0.9
SS18-218ENST00000581021 GMEB2Q9UKD1 530 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 CYP8B1Q9UNU6 501 aa20.69■□□□□ 0.9
SS18-218ENST00000581021 DOCK4Q8N1I0 1966 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 A0A0D9SEW6 157 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 C7P10643 843 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 VAV1P15498 845 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 NRG1Q02297 640 aaPredicted RBP20.68■□□□□ 0.9
SS18-218ENST00000581021 SPEM2Q0P670 501 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 SLC12A1Q13621 1099 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 HNRNPA1L2Q32P51 320 aaKnown RBP20.68■□□□□ 0.9
SS18-218ENST00000581021 RNF219Q5W0B1 726 aaPredicted RBP20.68■□□□□ 0.9
SS18-218ENST00000581021 LRRC31Q6UY01 552 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 KIAA2013Q8IYS2 634 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 OR2T3Q8NH03 318 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 PEBP4Q96S96 227 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 OSBPL2Q9H1P3 480 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 PRDM16Q9HAZ2 1276 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 NDFIP2Q9NV92 336 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 USP36Q9P275 1121 aaKnown RBP20.68■□□□□ 0.9
SS18-218ENST00000581021 OR12D3Q9UGF7 316 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 CEP250Q9BV73 2442 aa20.68■□□□□ 0.9
SS18-218ENST00000581021 SNAP91O60641 907 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 SIN3BO75182 1162 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 LRIG2O94898 1065 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 EIF4A3P38919 411 aaKnown RBP20.67■□□□□ 0.9
SS18-218ENST00000581021 DAB2IPQ5VWQ8 1189 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 CYP4V2Q6ZWL3 525 aaPredicted RBP20.67■□□□□ 0.9
SS18-218ENST00000581021 NLRP14Q86W24 1093 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 ARHGEF26Q96DR7 871 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 SPACA7Q96KW9 195 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 ZYG11BQ9C0D3 744 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 THAP2Q9H0W7 228 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 ARRDC1-AS1Q9H2J1 176 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 SMOC1Q9H4F8 434 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 MYO1AQ9UBC5 1043 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 PPARGC1AQ9UBK2 798 aaKnown RBP20.67■□□□□ 0.9
SS18-218ENST00000581021 VPS28Q9UK41 221 aa20.67■□□□□ 0.9
SS18-218ENST00000581021 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ANKRD62A6NC57 917 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 MFAP3LO75121 409 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 MOCS3O95396 460 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 RHOCP08134 193 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 SRPRAP08240 638 aaKnown RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 GLDCP23378 1020 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 PSMA2P25787 234 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 PTGER3P43115 390 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ADKP55263 362 aaKnown RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 RPS14P62263 151 aaKnown RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 TBX2Q13207 712 aaPredicted RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 TRIM14Q14142 442 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 E2F5Q15329 346 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ELF2Q15723 593 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ASTE1Q2TB18 679 aaPredicted RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 ARL13BQ3SXY8 428 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 C9orf64Q5T6V5 341 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ACBD5Q5T8D3 534 aaPredicted RBP20.66■□□□□ 0.9
SS18-218ENST00000581021 SCYL2Q6P3W7 929 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ARMCX6Q7L4S7 300 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 SLFN11Q7Z7L1 901 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 TMEFF1Q8IYR6 380 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 DEFB119Q8N690 84 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 KDM1BQ8NB78 822 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 OR7D4Q8NG98 312 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 FRS2Q8WU20 508 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 LOXL4Q96JB6 756 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 MUC3BQ9H195 1237 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 ABHD10Q9NUJ1 306 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 GPATCH2LQ9NWQ4 482 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 FZD10Q9ULW2 581 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 DCHS1Q96JQ0 3298 aa20.66■□□□□ 0.9
SS18-218ENST00000581021 TNRC6BQ9UPQ9 1833 aaKnown RBP20.65■□□□□ 0.9
SS18-218ENST00000581021 MT-CO1P00395 513 aa20.65■□□□□ 0.9
SS18-218ENST00000581021 MYBL1P10243 752 aa20.65■□□□□ 0.9
SS18-218ENST00000581021 TPMTP51580 245 aa20.65■□□□□ 0.9
SS18-218ENST00000581021 OXCT1P55809 520 aa20.65■□□□□ 0.9
SS18-218ENST00000581021 GFPT1Q06210 699 aaPredicted RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms