RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MBL2P11226 248 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 RHOQP17081 205 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 TPSB2P20231 275 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 PTPN3P26045 913 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 FDFT1P37268 417 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 MAGEA6P43360 314 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 PPP3CCP48454 512 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 UBE3AQ05086 875 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 PDIA2Q13087 525 aaKnown RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 SLC29A2Q14542 456 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 FASTKD3Q14CZ7 662 aaKnown RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 TPSAB1Q15661 275 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 HIF1AQ16665 826 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 BBS9Q3SYG4 887 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 MSS51Q4VC12 460 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ALFQ53S48 1182 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 TTMPQ5BVD1 217 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 HP1BP3Q5SSJ5 553 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 AFMIDQ63HM1 303 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 FAM109BQ6ICB4 259 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 FBXL22Q6P050 247 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 CENPUQ71F23 418 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 NLRP14Q86W24 1093 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 RELL1Q8IUW5 271 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ANKMY2Q8IV38 441 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ZNF567Q8N184 647 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ATPAF2Q8N5M1 289 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 LZTR1Q8N653 840 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 WBP2Q969T9 261 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 PLD4Q96BZ4 506 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 MYEOVQ96EZ4 313 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 KLF16Q9BXK1 252 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 ZYG11BQ9C0D3 744 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 RNF38Q9H0F5 515 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 TMBIM4Q9HC24 238 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 TRPC7Q9HCX4 862 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 TLR9Q9NR96 1032 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 GKN1Q9NS71 199 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 KLHL8Q9P2G9 620 aaPredicted RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 PPARGC1AQ9UBK2 798 aaKnown RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 IRAK3Q9Y616 596 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.79□□□□□ -0.68
SS18-217ENST00000580958 PDE4DIPQ5VU43 2346 aa10.79□□□□□ -0.68
SS18-217ENST00000580958 ANKRD36A6QL64 1941 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 IGLV3-10A0A075B6K4 115 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 DRGXA6NNA5 263 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 C5orf67F2Z3F1 127 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 ALOX15BO15296 676 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 CCL16O15467 120 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 STC2O76061 302 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 RB1P06400 928 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 PSMB4P28070 264 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 GABRR2P28476 465 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 SLC6A4P31645 630 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 IRS1P35568 1242 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 MAGEA10P43363 369 aaPredicted RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 LMAN1P49257 510 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 EIF3BP55884 814 aaKnown RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 CYP4F8P98187 520 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 ZBTB17Q13105 803 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 MTA1Q13330 715 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 SEMA5AQ13591 1074 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 KRT71Q3SY84 523 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 FAM133BQ5BKY9 247 aaKnown RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 PPM1LQ5SGD2 360 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 PPP1R21Q6ZMI0 780 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 TFAP2DQ7Z6R9 452 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 CIR1Q86X95 450 aaPredicted RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 TMC8Q8IU68 726 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 ZBED8Q8IZ13 594 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 LGI2Q8N0V4 545 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 PDIK1LQ8N165 341 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 ELMOD1Q8N336 334 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 MRPL43Q8N983 215 aaKnown RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 MICAL1Q8TDZ2 1067 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 USP33Q8TEY7 942 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 SLC22A17Q8WUG5 538 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 EXOC4Q96A65 974 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 RPRD1AQ96P16 312 aaPredicted RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 LRRC3Q9BY71 257 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 PHACTR1Q9C0D0 580 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 NOL6Q9H6R4 1146 aaKnown RBP10.78□□□□□ -0.68
SS18-217ENST00000580958 TMEM248Q9NWD8 314 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 VPS18Q9P253 973 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 IGSF9Q9P2J2 1179 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 CLUHO75153 1309 aa10.78□□□□□ -0.68
SS18-217ENST00000580958 C2orf16Q68DN1 1984 aa10.77□□□□□ -0.68
SS18-217ENST00000580958 GOLGA6L10A6NI86 522 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 SMIM23A6NLE4 172 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 E7ESA3 106 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 E7EVH7 732 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 F5H5T6 163 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 MTSS1O43312 755 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 JCHAINP01591 159 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 CA3P07451 260 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 APRTP07741 180 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 ABHD2P08910 425 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 MYZAPP0CAP1 466 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 CCNCP24863 283 aa10.77□□□□□ -0.69
SS18-217ENST00000580958 CORO1AP31146 461 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms