RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 KITP10721 976 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 FGF3P11487 239 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 SERPINB6P35237 376 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 GARSP41250 739 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 PDE1BQ01064 536 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 FRG1Q14331 258 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 GRTP1Q5TC63 336 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 PM20D1Q6GTS8 502 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 FAM171BQ6P995 826 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 RASAL3Q86YV0 1011 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ENDOVQ8N8Q3 282 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 MYLPFQ96A32 169 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 TKTL2Q9H0I9 626 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 ARMCX1Q9P291 453 aa10.32□□□□□ -0.76
VPS53-220ENST00000576149 MARCOQ9UEW3 520 aaPredicted RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 MYO18AQ92614 2054 aaKnown RBP10.32□□□□□ -0.76
VPS53-220ENST00000576149 TNPO2O14787 897 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 GPR182O15218 404 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 USP1O94782 785 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 LRIG2O94898 1065 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 TPBGLP0DKB5 382 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ODC1P11926 461 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 GNAZP19086 355 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 RPL10AP62906 217 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 MGAT3Q09327 533 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZBTB17Q13105 803 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 PCLAFQ15004 111 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 DCLRE1AQ6PJP8 1040 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 SERINC5Q86VE9 423 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.31□□□□□ -0.76
VPS53-220ENST00000576149 SMC1BQ8NDV3 1235 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 GIMAP7Q8NHV1 300 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 PPP1R14CQ8TAE6 165 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 DPF3Q92784 378 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ISL2Q96A47 359 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 PGLYRP2Q96PD5 576 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 NUDCD1Q96RS6 583 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 VAT1Q99536 393 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ACBD6Q9BR61 282 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 SIKE1Q9BRV8 207 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 MLPHQ9BV36 600 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 YY1AP1Q9H869 796 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 AGO3Q9H9G7 860 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 GEMIN8Q9NWZ8 242 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 PPARGC1AQ9UBK2 798 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 SNX10Q9Y5X0 201 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 COL4A4P53420 1690 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZCWPW2A0A1B0GU75 182 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZNF623O75123 536 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ENTPD5O75356 428 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 PROCP04070 461 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 CYP11A1P05108 521 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 RPSAP08865 295 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 TYK2P29597 1187 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 MAGEA12P43365 314 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZNF157P51786 506 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 SMAD1Q15797 465 aaKnown RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 ANKRD20A4Q4UJ75 823 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 PPM1JQ5JR12 505 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 TEDDM1Q5T9Z0 273 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ITPRIPL1Q6GPH6 555 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 RFWD3Q6PCD5 774 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 EP400NLQ6ZTU2 488 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 SCML4Q8N228 414 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 DNAAF3Q8N9W5 541 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 TTC8Q8TAM2 541 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZSCAN18Q8TBC5 510 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 KCNV2Q8TDN2 545 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ZNF669Q96BR6 464 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 TEKT5Q96M29 485 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 RBBP8Q99708 897 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 SPOCK3Q9BQ16 436 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 MMADHCQ9H3L0 296 aaPredicted RBP10.31□□□□□ -0.76
VPS53-220ENST00000576149 RRAGCQ9HB90 399 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 ADAM28Q9UKQ2 775 aa10.31□□□□□ -0.76
VPS53-220ENST00000576149 MAGEB16A2A368 324 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 ITM2AO43736 263 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 LMNAP02545 664 aaKnown RBP10.3□□□□□ -0.76
VPS53-220ENST00000576149 NFKB1P19838 968 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 BDNFP23560 247 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 ELF1P32519 619 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 SPRP35270 261 aaPredicted RBP10.3□□□□□ -0.76
VPS53-220ENST00000576149 SLC1A6P48664 564 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 NPY2RP49146 381 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 LIMK2P53671 638 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 TAC4Q86UU9 113 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 METTL23Q86XA0 190 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 TREML1Q86YW5 311 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 IFNL1Q8IU54 200 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 DCLK2Q8N568 766 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 PIWIL2Q8TC59 973 aaKnown RBP10.3□□□□□ -0.76
VPS53-220ENST00000576149 RSRC1Q96IZ7 334 aaKnown RBP10.3□□□□□ -0.76
VPS53-220ENST00000576149 PKMYT1Q99640 499 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 CCDC106Q9BWC9 280 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 DMAP1Q9NPF5 467 aaPredicted RBP10.3□□□□□ -0.76
VPS53-220ENST00000576149 SNX15Q9NRS6 342 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 TMEM216Q9P0N5 145 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 TRPM7Q96QT4 1865 aa10.3□□□□□ -0.76
VPS53-220ENST00000576149 SCN10AQ9Y5Y9 1956 aa10.29□□□□□ -0.76
VPS53-220ENST00000576149 ARHGAP42A6NI28 874 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms