RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RAP1GAP2Q684P5 730 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 KLHL10Q6JEL2 608 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 CXorf57Q6NSI4 855 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 DPY19L2P1Q6NXN4 242 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 NCEH1Q6PIU2 408 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 KANSL1Q7Z3B3 1105 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 CIR1Q86X95 450 aaPredicted RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 IRF2BP1Q8IU81 584 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 MMAAQ8IVH4 418 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 LGI2Q8N0V4 545 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 STK40Q8N2I9 435 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 CARNMT1Q8N4J0 409 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 KDM1BQ8NB78 822 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 RHBDD1Q8TEB9 315 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 STK32AQ8WU08 396 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 FRS2Q8WU20 508 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 ZNF606Q8WXB4 792 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 GOLGA1Q92805 767 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 IGSF8Q969P0 613 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 CCDC34Q96HJ3 373 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 RPL10LQ96L21 214 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 SERPINB11Q96P15 392 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 SRRTQ9BXP5 876 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 INTS2Q9H0H0 1204 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 FBXL12Q9NXK8 326 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 ARHGAP20Q9P2F6 1191 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 PRDM4Q9UKN5 801 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 SARDHQ9UL12 918 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 LHX6Q9UPM6 363 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 APOBEC2Q9Y235 224 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 OR51B4Q9Y5P0 310 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 MGAQ8IWI9 3026 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 HELZ2Q9BYK8 2649 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 TARSL2A2RTX5 802 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 FAM149AA5PLN7 773 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 RNF103O00237 685 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CBX4O00257 560 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 PLK4O00444 970 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 BIN1O00499 593 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 LATO43561 262 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 MOCS2O96007 188 aaPredicted RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 AFPP02771 609 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 ASLP04424 464 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SRPRAP08240 638 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 SLC9A1P19634 815 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SLC8A1P32418 973 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 RDXP35241 583 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 PLK1P53350 603 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 ADPRHP54922 357 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 PPP2CBP62714 309 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 RACK1P63244 317 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 PPP2CAP67775 309 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 DMTNQ08495 405 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 PDCLQ13371 301 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SMAD1Q15797 465 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 TTC31Q49AM3 519 aaPredicted RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 C19orf48Q6RUI8 117 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SPATS2Q86XZ4 545 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 GATAD2AQ86YP4 633 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 ZNF683Q8IZ20 524 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CCAR2Q8N163 923 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 ZNF557Q8N988 423 aaPredicted RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 OR2T34Q8NGX1 318 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SAP25Q8TEE9 199 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 FAM149B1Q96BN6 582 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 BTN2A3PQ96KV6 586 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SLC2A13Q96QE2 648 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 PPP1R9BQ96SB3 815 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CPXM1Q96SM3 734 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CDC6Q99741 560 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CRACR2AQ9BSW2 395 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 CAAP1Q9H8G2 361 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 POPDC2Q9HBU9 364 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SIX2Q9NPC8 291 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 UBE2TQ9NPD8 197 aaPredicted RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 ANLNQ9NQW6 1124 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 ST7Q9NRC1 585 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 DKK4Q9UBT3 224 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 FZD4Q9ULV1 537 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 SCML1Q9UN30 329 aa6.94□□□□□ -1.3
VPS53-213ENST00000572334 GCN1Q92616 2671 aaKnown RBP6.94□□□□□ -1.3
VPS53-213ENST00000572334 EDDM13A0A1B0GTR0 161 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TRABD2BA6NFA1 517 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 FAM47DPA6NHR8 397 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 GOLGA8CPA6NN73 597 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 SART1O43290 800 aaKnown RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 THAP12O43422 761 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TNFSF14O43557 240 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 KRT5P13647 590 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 PDGFRAP16234 1089 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 GOT1P17174 413 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TFE3P19532 575 aaPredicted RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 C5AR1P21730 350 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 GNA15P30679 374 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 GGCXP38435 758 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 PPP1R2P41236 205 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 GRK6P43250 576 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 ACADSBP45954 432 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 PSMD8P48556 350 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 VASPP50552 380 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms