RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KDM1BQ8NB78 822 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 ZNF507Q8TCN5 953 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 WFDC5Q8TCV5 224 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 TTC17Q96AE7 1141 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 CLIC6Q96NY7 704 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 USP28Q96RU2 1077 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 DDX50Q9BQ39 737 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 LRRC4CQ9HCJ2 640 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 DNAJC28Q9NX36 388 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 CGNQ9P2M7 1197 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 TFIP11Q9UBB9 837 aaKnown RBP11.47□□□□□ -0.57
VPS53-207ENST00000570510 TJP2Q9UDY2 1190 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 ERVW-1Q9UQF0 538 aa11.47□□□□□ -0.57
VPS53-207ENST00000570510 LRRIQ3A6PVS8 624 aaPredicted RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 CDRT15L2A8MXV6 281 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SCAMP1O15126 338 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SLC31A1O15431 190 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 TGFB1I1O43294 461 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 PIAS2O75928 621 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 C4BPAP04003 597 aaKnown RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 ITGA2BP08514 1039 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 MZF1P28698 734 aaPredicted RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 AKT2P31751 481 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 HOXD13P35453 343 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 HNRNPKP61978 463 aaKnown RBP eCLIP11.46□□□□□ -0.57
VPS53-207ENST00000570510 NUCB2P80303 420 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SKOR1P84550 965 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ECT2LQ008S8 904 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ARID5BQ14865 1188 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ZNF394Q53GI3 561 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 FAM26FQ5R3K3 315 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 PPP1R26Q5T8A7 1209 aaPredicted RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 PIK3R6Q5UE93 754 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SPOPLQ6IQ16 392 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ZCCHC8Q6NZY4 707 aaKnown RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 CNNM4Q6P4Q7 775 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 EFL1Q7Z2Z2 1120 aaKnown RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 UNC45BQ8IWX7 931 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 HJURPQ8NCD3 748 aaPredicted RBP11.46□□□□□ -0.57
VPS53-207ENST00000570510 FIBINQ8TAL6 211 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 PARD3BQ8TEW8 1205 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 EDEM1Q92611 657 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 TWNKQ96RR1 684 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 FAM129BQ96TA1 746 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SEMA3CQ99985 751 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 SLC25A18Q9H1K4 315 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 LRRC4Q9HBW1 653 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ARHGAP20Q9P2F6 1191 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 STOML2Q9UJZ1 356 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 RCOR1Q9UKL0 485 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 CA5BQ9Y2D0 317 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 ENTPD2Q9Y5L3 495 aa11.46□□□□□ -0.57
VPS53-207ENST00000570510 BOD1L1Q8NFC6 3051 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 CCDC187A0A096LP49 1063 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 H3BM21 787 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 K7ESM1 405 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 RIOK3O14730 519 aaKnown RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 SLC7A4O43246 635 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 EFSO43281 561 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 TCEA3O75764 348 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 VNN1O95497 513 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 ITGB6P18564 788 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 ASPAP45381 313 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 SGSHP51688 502 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 CEBPZQ03701 1054 aaKnown RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 CCDC15Q0P6D6 951 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 ACCSLQ4AC99 568 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 MANEAQ5SRI9 462 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 NUGGCQ68CJ6 796 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 CRTC1Q6UUV9 634 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 CLEC14AQ86T13 490 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 PIGZQ86VD9 579 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 TRIM69Q86WT6 500 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 GOLGA5Q8TBA6 731 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 GLMNQ92990 594 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 MYO19Q96H55 970 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 RPL10LQ96L21 214 aaKnown RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 SPAG5Q96R06 1193 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 IRX2Q9BZI1 471 aaPredicted RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 ULBP1Q9BZM6 244 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 SCAND2PQ9GZW5 306 aaPredicted RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 TNMDQ9H2S6 317 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 CYP3A43Q9HB55 503 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 USP25Q9UHP3 1055 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 IPO11Q9UI26 975 aaKnown RBP11.45□□□□□ -0.58
VPS53-207ENST00000570510 SLCO3A1Q9UIG8 710 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 PCDHB11Q9Y5F2 797 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 MYO9AB2RTY4 2548 aa11.45□□□□□ -0.58
VPS53-207ENST00000570510 ARID1BQ8NFD5 2236 aaPredicted RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 GOLGA6L7A0A1B0GV03 622 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 C1QTNF3-AMACRE9PGA6 284 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 MSI1O43347 362 aaKnown RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 PLRG1O43660 514 aaKnown RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 NEBLO76041 1014 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 ASS1P00966 412 aaKnown RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 MYL1P05976 194 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 PRLRP16471 622 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 SLC5A2P31639 672 aa11.44□□□□□ -0.58
VPS53-207ENST00000570510 CTSOP43234 321 aaPredicted RBP11.44□□□□□ -0.58
VPS53-207ENST00000570510 RPIAP49247 311 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms