RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PCDHB4Q9Y5E5 795 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 LINC01387J3KSC0 135 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 NFIBO00712 420 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ZBTB7AO95365 584 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CFBP00751 764 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 RPA3P35244 121 aaPredicted RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 SOX5P35711 763 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ST13P50502 369 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 RPL26P61254 145 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 C21orf62-AS1Q17RA5 79 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CEP55Q53EZ4 464 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 TCHHL1Q5QJ38 904 aaPredicted RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 FKBP1CQ5VVH2 108 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ZNF720Q7Z2F6 126 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ALYREFQ86V81 257 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 ZSWIM2Q8NEG5 633 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 HTRA1Q92743 480 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 TMEM246Q9BRR3 403 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CHID1Q9BWS9 393 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 FRMD8Q9BZ67 464 aaPredicted RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 TUFT1Q9NNX1 390 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ATP13A2Q9NQ11 1180 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 VPS45Q9NRW7 570 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ADPRHL2Q9NX46 363 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 EMC3Q9P0I2 261 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 FAM187AA6NFU0 413 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 MAGEB2O15479 319 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CETPP11597 493 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 IFI30P13284 250 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 HPCAL1P37235 193 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 SLC25A3Q00325 362 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CTBSQ01459 385 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CBWD6Q4V339 395 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CBWD3Q5JTY5 395 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CBWD5Q5RIA9 395 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 C1orf220Q5T0J3 134 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 RARS2Q5T160 578 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 ALKBH5Q6P6C2 394 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 SLC30A5Q8TAD4 765 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ZUFSPQ96AP4 578 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 HES6Q96HZ4 224 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 MCCC2Q9HCC0 563 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 TOR4AQ9NXH8 423 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ANAPC5Q9UJX4 755 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 RAB26Q9ULW5 256 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 TRAF6Q9Y4K3 522 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 ASTN2O75129 1339 aaPredicted RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 A8MUA0 341 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 H3BNX3 289 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 I3L4J1 428 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 INHBBP09529 407 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 H2AFZP0C0S5 128 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 DPEP1P16444 411 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CD9P21926 228 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 EEF1DP29692 281 aaKnown RBP11.07□□□□□ -0.64
CLK3-226ENST00000569406 OR3A3P47888 321 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 PRELPP51888 382 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CDK16Q00536 496 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 MTERF2Q49AM1 385 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 KCNT1Q5JUK3 1230 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 POTEAQ6S8J7 498 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 H2AFVQ71UI9 128 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 LDHDQ86WU2 507 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CPA6Q8N4T0 437 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 SLC4A11Q8NBS3 891 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 MCMBPQ9BTE3 642 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 RAD21L1Q9H4I0 556 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CYP26B1Q9NR63 512 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 PCDH10Q9P2E7 1040 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 PCDHGB3Q9Y5G1 929 aa11.07□□□□□ -0.64
CLK3-226ENST00000569406 CDH16O75309 829 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 GCNT3O95395 438 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 EIF2AK2P19525 551 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 HMGB2P26583 209 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 PKLRP30613 574 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 POLR2BP30876 1174 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 ZNF33BQ06732 778 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 NR1H3Q13133 447 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 MAPRE1Q15691 268 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 DLG2Q15700 870 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 LRIT3Q3SXY7 679 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 ANKRD26P1Q6NSI1 321 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 FAM83AQ86UY5 434 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CCDC105Q8IYK2 499 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 FAM109AQ8N4B1 249 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 EMILIN2Q9BXX0 1053 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 RNPEPQ9H4A4 650 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 TIGARQ9NQ88 270 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 SEPT3Q9UH03 358 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 MRPS7Q9Y2R9 242 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 BTNL10A8MVZ5 291 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 TISP43B9A030 160 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CCNT2O60583 730 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 MYL2P10916 166 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 XRCC5P13010 732 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 ARNTP27540 789 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 RPL10P27635 214 aaKnown RBP11.06□□□□□ -0.64
CLK3-226ENST00000569406 ALDH3B2P48448 385 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CXCL9Q07325 125 aa11.06□□□□□ -0.64
CLK3-226ENST00000569406 CSTF3Q12996 717 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms