RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FEM1AQ9BSK4 669 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 PCED1AQ9H1Q7 454 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 TMEM9BQ9NQ34 198 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 SLCO3A1Q9UIG8 710 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 MYO6Q9UM54 1294 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 SLC6A14Q9UN76 642 aa20.9■□□□□ 0.94
CLK3-225ENST00000569063 DRGXA6NNA5 263 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 C4orf47A7E2U8 309 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 METTL12A8MUP2 240 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 TTC34A8MYJ7 566 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 SIN3BO75182 1162 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 DNTTP04053 509 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 SERPINF2P08697 491 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 CCDC172P0C7W6 258 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 FERP16591 822 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 FILIP1LQ4L180 1135 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 RNF219Q5W0B1 726 aaPredicted RBP20.89■□□□□ 0.93
CLK3-225ENST00000569063 ZNF776Q68DI1 518 aaPredicted RBP20.89■□□□□ 0.93
CLK3-225ENST00000569063 EMC1Q8N766 993 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 OR52K2Q8NGK3 314 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 DNASE2BQ8WZ79 361 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 RPL10LQ96L21 214 aaKnown RBP20.89■□□□□ 0.93
CLK3-225ENST00000569063 CAPN10Q9HC96 672 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 ADAM22Q9P0K1 906 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 SCML1Q9UN30 329 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 OR51B4Q9Y5P0 310 aa20.89■□□□□ 0.93
CLK3-225ENST00000569063 IGLV3-10A0A075B6K4 115 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 EDDM13A0A1B0GTR0 161 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 C2CD4BA6NLJ0 364 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 CFIP05156 583 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 NNMTP40261 264 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 CCDC14Q49A88 953 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 ARTNQ5T4W7 220 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 LRRC31Q6UY01 552 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 IRF2BP2Q7Z5L9 587 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 RGL4Q8IZJ4 473 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 RXFP2Q8WXD0 754 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 BAP1Q92560 729 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 TMPRSS4Q9NRS4 437 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 SUSD2Q9UGT4 822 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 SNX10Q9Y5X0 201 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 CACNA1AO00555 2505 aa20.88■□□□□ 0.93
CLK3-225ENST00000569063 A0A1B0GTH6 734 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 A0A1W2PQC6 194 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 SYCE3A1L190 88 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 RNASEH1O60930 286 aaKnown RBP20.87■□□□□ 0.93
CLK3-225ENST00000569063 CNTN5O94779 1100 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 CALB1P05937 261 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 KRT3P12035 628 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 GNSP15586 552 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 ENGP17813 658 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 SDC4P31431 198 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 ACSL1P33121 698 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 PTPN9P43378 593 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 STK19P49842 368 aaPredicted RBP20.87■□□□□ 0.93
CLK3-225ENST00000569063 ATP11AP98196 1134 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 GFPT1Q06210 699 aaPredicted RBP20.87■□□□□ 0.93
CLK3-225ENST00000569063 TTC31Q49AM3 519 aaPredicted RBP20.87■□□□□ 0.93
CLK3-225ENST00000569063 ALFQ53S48 1182 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 PPM1JQ5JR12 505 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 DAB2IPQ5VWQ8 1189 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 USP30Q70CQ3 517 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 PHLDB2Q86SQ0 1253 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 SETD3Q86TU7 594 aaPredicted RBP20.87■□□□□ 0.93
CLK3-225ENST00000569063 FAM124AQ86V42 546 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 FAM131BQ86XD5 332 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 JOSD2Q8TAC2 188 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 PTPRN2Q92932 1015 aa20.87■□□□□ 0.93
CLK3-225ENST00000569063 MEI4A8MW99 385 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 E9PAM4 449 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 PTMSP20962 102 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 MAOBP27338 520 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 C1QBPQ07021 282 aaKnown RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 C15orf59Q2T9L4 293 aaPredicted RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 DCAF12L1Q5VU92 463 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 MON1BQ7L1V2 547 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 STRADAQ7RTN6 431 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 C3orf20Q8ND61 904 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 FRS2Q8WU20 508 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 CENPIQ92674 756 aaPredicted RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 NAP1L5Q96NT1 182 aaPredicted RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 FAM129BQ96TA1 746 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 SYT11Q9BT88 431 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 BTBD1Q9H0C5 482 aa20.86■□□□□ 0.93
CLK3-225ENST00000569063 PABPC3Q9H361 631 aaKnown RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 SEPT11Q9NVA2 429 aaKnown RBP20.86■□□□□ 0.93
CLK3-225ENST00000569063 SIGLEC16A6NMB1 481 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 GJB6O95452 261 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 RFC1P35251 1148 aaPredicted RBP20.85■□□□□ 0.93
CLK3-225ENST00000569063 ADRA1BP35368 520 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 NUMBP49757 651 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 SFSWAPQ12872 951 aaKnown RBP20.85■□□□□ 0.93
CLK3-225ENST00000569063 NR1I3Q14994 352 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 CST6Q15828 149 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 RAB6CQ53S08 254 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 SH3PXD2AQ5TCZ1 1133 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 SELENOOQ9BVL4 669 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 RAB6CQ9H0N0 254 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 MUC3BQ9H195 1237 aa20.85■□□□□ 0.93
CLK3-225ENST00000569063 SGK2Q9HBY8 427 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms