RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 SLC12A1Q13621 1099 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 DUOXA1Q1HG43 343 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 CLEC16AQ2KHT3 1053 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 ALFQ53S48 1182 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 PPM1JQ5JR12 505 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 RGL4Q8IZJ4 473 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 JOSD2Q8TAC2 188 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 FOXJ1Q92949 421 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 FEM1AQ9BSK4 669 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 NUSAP1Q9BXS6 441 aaKnown RBP18.93■□□□□ 0.62
CLN3-237ENST00000569030 RSPH9Q9H1X1 276 aaPredicted RBP18.93■□□□□ 0.62
CLN3-237ENST00000569030 FBRSQ9HAH7 460 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 TMEM9BQ9NQ34 198 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 OR51B4Q9Y5P0 310 aa18.93■□□□□ 0.62
CLN3-237ENST00000569030 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.92■□□□□ 0.62
CLN3-237ENST00000569030 CLDN11O75508 207 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ENDOD1O94919 500 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 SERPINF2P08697 491 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ENGP17813 658 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ACSL1P33121 698 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ATP11AP98196 1134 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ZNF177Q13360 481 aaPredicted RBP18.92■□□□□ 0.62
CLN3-237ENST00000569030 CCDC14Q49A88 953 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 SYCP2LQ5T4T6 812 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 SH3PXD2AQ5TCZ1 1133 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 IRF2BP2Q7Z5L9 587 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 FAM131BQ86XD5 332 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 PHF13Q86YI8 300 aaPredicted RBP18.92■□□□□ 0.62
CLN3-237ENST00000569030 CADM4Q8NFZ8 388 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 CEP76Q8TAP6 659 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 RXFP2Q8WXD0 754 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 C1orf74Q96LT6 269 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 NAP1L5Q96NT1 182 aaPredicted RBP18.92■□□□□ 0.62
CLN3-237ENST00000569030 FAM129BQ96TA1 746 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 AGPAT1Q99943 283 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 CAPN10Q9HC96 672 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 SLC6A14Q9UN76 642 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 TBC1D30Q9Y2I9 924 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 ITIH6Q6UXX5 1313 aa18.92■□□□□ 0.62
CLN3-237ENST00000569030 DOCK9Q9BZ29 2069 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 SYCE3A1L190 88 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 TARSL2A2RTX5 802 aaKnown RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 DRGXA6NNA5 263 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 METTL12A8MUP2 240 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 DNTTP04053 509 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 VAV1P15498 845 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 RDXP35241 583 aaKnown RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 NSFP46459 744 aaKnown RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 CDH4P55283 916 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 OXCT1P55809 520 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 ZBTB16Q05516 673 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 C15orf59Q2T9L4 293 aaPredicted RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 KLHL40Q2TBA0 621 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 DCAF12L1Q5VU92 463 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 RNF219Q5W0B1 726 aaPredicted RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 ZNF776Q68DI1 518 aaPredicted RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 DNASE2BQ8WZ79 361 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 BAP1Q92560 729 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 PTPRN2Q92932 1015 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 C6orf106Q9H6K1 298 aaPredicted RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 SEPT11Q9NVA2 429 aaKnown RBP18.91■□□□□ 0.62
CLN3-237ENST00000569030 MPP6Q9NZW5 540 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 ADAM22Q9P0K1 906 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 PAXBP1Q9Y5B6 917 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 CHD8Q9HCK8 2581 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 CHD5Q8TDI0 1954 aa18.91■□□□□ 0.62
CLN3-237ENST00000569030 EDDM13A0A1B0GTR0 161 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 C2CD4BA6NLJ0 364 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 RFC1P35251 1148 aaPredicted RBP18.9■□□□□ 0.62
CLN3-237ENST00000569030 MAPK8P45983 427 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 SULT2A1Q06520 285 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 CDO1Q16878 200 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 WDR45BQ5MNZ6 344 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 MMAAQ8IVH4 418 aaKnown RBP18.9■□□□□ 0.62
CLN3-237ENST00000569030 FRS2Q8WU20 508 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 HAPLN3Q96S86 360 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 TMEM51Q9NW97 253 aa18.9■□□□□ 0.62
CLN3-237ENST00000569030 TPRP12270 2363 aaKnown RBP18.9■□□□□ 0.62
CLN3-237ENST00000569030 PLXNA2O75051 1894 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 IGLV3-10A0A075B6K4 115 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 A0A1B0GTH6 734 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 MEI4A8MW99 385 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 E9PAM4 449 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 MID1O15344 667 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 SRGAP2O75044 1071 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 KRT3P12035 628 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 FERP16591 822 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 KCNA4P22459 653 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 GSCP56915 257 aaPredicted RBP18.89■□□□□ 0.61
CLN3-237ENST00000569030 GFPT1Q06210 699 aaPredicted RBP18.89■□□□□ 0.61
CLN3-237ENST00000569030 UAP1L1Q3KQV9 507 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 LRRC31Q6UY01 552 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 MON1BQ7L1V2 547 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 STK40Q8N2I9 435 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 PPP1R9BQ96SB3 815 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 SYT11Q9BT88 431 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 MAGEB5Q9BZ81 275 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 MIR1-1HGQ9H1L0 117 aa18.89■□□□□ 0.61
CLN3-237ENST00000569030 PABPC3Q9H361 631 aaKnown RBP18.89■□□□□ 0.61
CLN3-237ENST00000569030 SERGEFQ9UGK8 458 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms