RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RNF34Q969K3 372 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 PLD4Q96BZ4 506 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 SLC39A13Q96H72 371 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 CDK5RAP1Q96SZ6 601 aaKnown RBP14.37□□□□□ -0.11
CLN3-235ENST00000568497 PNKPQ96T60 521 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 ACOX2Q99424 681 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 PIGVQ9NUD9 493 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLN3-235ENST00000568497 CYP8B1Q9UNU6 501 aa14.37□□□□□ -0.11
CLN3-235ENST00000568497 HBS1LQ9Y450 684 aaKnown RBP14.37□□□□□ -0.11
CLN3-235ENST00000568497 HECTD1Q9ULT8 2610 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 A0A0A0MRY4 1105 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 PRRT4C9JH25 899 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 ZBTB24O43167 697 aaPredicted RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 HOXC11O43248 304 aaPredicted RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 ACSL4O60488 711 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 TBL1XO60907 577 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 ADAM23O75077 832 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 CBFA2T3O75081 653 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 NDUFS2O75306 463 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 KAT7O95251 611 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 ATXN1LP0C7T5 689 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 EIF2DP41214 584 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 NSFP46459 744 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 HARS2P49590 506 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 RPL7AP62424 266 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 CDK17Q00537 523 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 OGDHQ02218 1023 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 CENPCQ03188 943 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 CFHR1Q03591 330 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 GEN1Q17RS7 908 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 SYCP2LQ5T4T6 812 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 PIK3R6Q5UE93 754 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 ACAD10Q6JQN1 1059 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 MON1BQ7L1V2 547 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 ZNF677Q86XU0 584 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 VSTM4Q8IW00 320 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 PDCD7Q8N8D1 485 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 LSM14AQ8ND56 463 aaKnown RBP14.36□□□□□ -0.11
CLN3-235ENST00000568497 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.36□□□□□ -0.11
CLN3-235ENST00000568497 CLMPQ9H6B4 373 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 AIPL1Q9NZN9 384 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 MYO1AQ9UBC5 1043 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 TMEM59LQ9UK28 342 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 CAPN11Q9UMQ6 739 aa14.36□□□□□ -0.11
CLN3-235ENST00000568497 MYO18BQ8IUG5 2567 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 TBC1D3BA6NDS4 549 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 SART1O43290 800 aaKnown RBP14.35□□□□□ -0.11
CLN3-235ENST00000568497 CISD3P0C7P0 127 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 GABRG2P18507 467 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 HOXD9P28356 352 aaPredicted RBP14.35□□□□□ -0.11
CLN3-235ENST00000568497 RFC1P35251 1148 aaPredicted RBP14.35□□□□□ -0.11
CLN3-235ENST00000568497 KIR2DL1P43626 348 aaPredicted RBP14.35□□□□□ -0.11
CLN3-235ENST00000568497 CCDC14Q49A88 953 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 C10orf76Q5T2E6 689 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 EGFLAMQ63HQ2 1017 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 CHSY1Q86X52 802 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 FAM131BQ86XD5 332 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 CPNE8Q86YQ8 564 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 LGI2Q8N0V4 545 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 KIAA1958Q8N8K9 716 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 SERPINB11Q96P15 392 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 NPY6RQ99463 290 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 TRIM5Q9C035 493 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 SIK2Q9H0K1 926 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 PRORYQ9H606 182 aa14.35□□□□□ -0.11
CLN3-235ENST00000568497 IGHV1OR15-9A0A0B4J2B8 117 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 WASH3PC4AMC7 463 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 PYCARD-AS1I3L0S3 204 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 GFRA2O00451 464 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 HLA-EP13747 358 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 ABCB4P21439 1286 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 TACR2P21452 398 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 MAOBP27338 520 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 CD70P32970 193 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 NOS2P35228 1153 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 MATKP42679 507 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 DEUP1Q05D60 604 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 EIF4EBP2Q13542 120 aaPredicted RBP14.34□□□□□ -0.11
CLN3-235ENST00000568497 FSCBQ5H9T9 825 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 TMEM215Q68D42 235 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 GRAMD4Q6IC98 578 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 WDR59Q6PJI9 974 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 TRIM72Q6ZMU5 477 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 PHF13Q86YI8 300 aaPredicted RBP14.34□□□□□ -0.11
CLN3-235ENST00000568497 MCOLN2Q8IZK6 566 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 CARNMT1Q8N4J0 409 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 ZNF366Q8N895 744 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 RHBDD1Q8TEB9 315 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 CYB5D2Q8WUJ1 264 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 IGSF8Q969P0 613 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 BTBD6Q96KE9 485 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 MCEEQ96PE7 176 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 CHP1Q99653 195 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 DCLK3Q9C098 648 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 ZDHHC5Q9C0B5 715 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 SLC6A17Q9H1V8 727 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 TM7SF3Q9NS93 570 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 ASNSD1Q9NWL6 643 aa14.34□□□□□ -0.11
CLN3-235ENST00000568497 ARHGAP20Q9P2F6 1191 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms