RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 NUMBP49757 651 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 RPS24P62847 133 aaKnown RBP16.74■□□□□ 0.27
CLK3-223ENST00000568488 SKOR1P84550 965 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 SLC39A14Q15043 492 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 FAM133BQ5BKY9 247 aaKnown RBP16.74■□□□□ 0.27
CLK3-223ENST00000568488 CEP135Q66GS9 1140 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 USP53Q70EK8 1073 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 UNC45BQ8IWX7 931 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 CFAP52Q8N1V2 620 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 ANKRD52Q8NB46 1076 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 CCDC150Q8NCX0 1101 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 TMC2Q8TDI7 906 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 TAS1R2Q8TE23 839 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 EXTL1Q92935 676 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 ARRDC3Q96B67 414 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 CALN1Q9BXU9 219 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 MMRN2Q9H8L6 949 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 ABCC13Q9NSE7 274 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 STARD5Q9NSY2 213 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 DMAC2Q9NW81 257 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 NLGN3Q9NZ94 848 aa16.74■□□□□ 0.27
CLK3-223ENST00000568488 CPED1A4D0V7 1026 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 PMS2P1A4D2B8 440 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 NEMP2A6NFY4 417 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 EFSO43281 561 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 PLRG1O43660 514 aaKnown RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 NEBLO76041 1014 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 TNFSF15O95150 251 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 GJB6O95452 261 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 VAV1P15498 845 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 NNMTP40261 264 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 STK19P49842 368 aaPredicted RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 ADIGQ0VDE8 80 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 ELAVL3Q14576 367 aaKnown RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 ZNF542PQ5EBM4 170 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 CNNM4Q6P4Q7 775 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 CRTC1Q6UUV9 634 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 TRIM69Q86WT6 500 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 IQUBQ8NA54 791 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 SLC4A11Q8NBS3 891 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 TATDN2Q93075 761 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 PRR11Q96HE9 360 aaPredicted RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 USP28Q96RU2 1077 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 BACH2Q9BYV9 841 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 IRX2Q9BZI1 471 aaPredicted RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 SEPT3Q9UH03 358 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 PCDHGA8Q9Y5G5 932 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 ENTPD2Q9Y5L3 495 aa16.73■□□□□ 0.27
CLK3-223ENST00000568488 TDRD6O60522 2096 aaKnown RBP16.73■□□□□ 0.27
CLK3-223ENST00000568488 ITIH6Q6UXX5 1313 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 LY6G6EA0A0G2JKS1 128 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 CDRT15L2A8MXV6 281 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 K7ESM1 405 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 SLC7A4O43246 635 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 AFPP02771 609 aaKnown RBP16.72■□□□□ 0.27
CLK3-223ENST00000568488 PRLRP16471 622 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 GCLMP48507 274 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 CDKN3Q16667 212 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 GOLGA7BQ2TAP0 167 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 C1orf220Q5T0J3 134 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 NUGGCQ68CJ6 796 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 ARHGAP17Q68EM7 881 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 XKR5Q6UX68 686 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 APCDD1Q8J025 514 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 SIX6OS1Q8N1H7 587 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 GRAMD1AQ96CP6 724 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 MYEOVQ96EZ4 313 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 PRICKLE1Q96MT3 831 aaPredicted RBP16.72■□□□□ 0.27
CLK3-223ENST00000568488 DDX50Q9BQ39 737 aaKnown RBP16.72■□□□□ 0.27
CLK3-223ENST00000568488 DUSP23Q9BVJ7 150 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 USP29Q9HBJ7 922 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 TJP2Q9UDY2 1190 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 FRMD4BQ9Y2L6 1034 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 U3KQA8 63 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 TEX15Q9BXT5 2789 aa16.72■□□□□ 0.27
CLK3-223ENST00000568488 XPO1O14980 1071 aaKnown RBP16.71■□□□□ 0.27
CLK3-223ENST00000568488 SCAMP1O15126 338 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 RNGTTO60942 597 aaKnown RBP16.71■□□□□ 0.27
CLK3-223ENST00000568488 NR3C1P04150 777 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 FAM87AP0C7U9 286 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 GP1BBP13224 206 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 LCP1P13796 627 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 VAMP7P51809 220 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 RAD23BP54727 409 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 TBX4P57082 545 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 CNTN1Q12860 1018 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 UBAP2LQ14157 1087 aaKnown RBP16.71■□□□□ 0.27
CLK3-223ENST00000568488 FAM46CQ5VWP2 391 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 NADSYN1Q6IA69 706 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 RBM44Q6ZP01 1051 aaKnown RBP16.71■□□□□ 0.27
CLK3-223ENST00000568488 EFL1Q7Z2Z2 1120 aaKnown RBP16.71■□□□□ 0.27
CLK3-223ENST00000568488 SLC9A9Q8IVB4 645 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 OR13H1Q8NG92 308 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 OR8D1Q8WZ84 308 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 SPAG5Q96R06 1193 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 FZD3Q9NPG1 666 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 CISHQ9NSE2 258 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 DNAJC28Q9NX36 388 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 SARDHQ9UL12 918 aa16.71■□□□□ 0.27
CLK3-223ENST00000568488 DOCK9Q9BZ29 2069 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms