RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 NUMBP49757 651 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 COPAP53621 1224 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 AIF1P55008 147 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 SLC12A1Q13621 1099 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 ARL13BQ3SXY8 428 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 SERPINA13PQ6UXR4 307 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 TFAP2DQ7Z6R9 452 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 SLFN11Q7Z7L1 901 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 ZNF366Q8N895 744 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 UCMAQ8WVF2 138 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 HMGB4Q8WW32 186 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 GAB3Q8WWW8 586 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 NKD2Q969F2 451 aaPredicted RBP10.08□□□□□ -0.8
CLK3-220ENST00000567992 BTBD6Q96KE9 485 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 PSMB7Q99436 277 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 FEM1AQ9BSK4 669 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 NUP85Q9BW27 656 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 ZYG11BQ9C0D3 744 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 SLC6A17Q9H1V8 727 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 SEMA4AQ9H3S1 761 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 MRPL47Q9HD33 250 aaKnown RBP10.08□□□□□ -0.8
CLK3-220ENST00000567992 POLMQ9NP87 494 aaPredicted RBP10.08□□□□□ -0.8
CLK3-220ENST00000567992 SPTLC3Q9NUV7 552 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 NDFIP2Q9NV92 336 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 ERVW-1Q9UQF0 538 aa10.08□□□□□ -0.8
CLK3-220ENST00000567992 RIF1Q5UIP0 2472 aaKnown RBP10.08□□□□□ -0.8
CLK3-220ENST00000567992 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 A0A0D9SEW6 157 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 DCLK1O15075 740 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 AKR1B10O60218 316 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 RPP40O75818 363 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 ASLP04424 464 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 ATP5BP06576 529 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 SRPRAP08240 638 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 IL1R2P27930 398 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 MIPP30301 263 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 L1CAMP32004 1257 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 CNR2P34972 360 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 STK19P49842 368 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 ZNF177Q13360 481 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 CAMK2GQ13555 558 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 CA9Q16790 459 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 MAP7D1Q3KQU3 841 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 FNDC3BQ53EP0 1204 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 EFHC2Q5JST6 749 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 RNF219Q5W0B1 726 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 SCYL2Q6P3W7 929 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 LRRC31Q6UY01 552 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 SETD3Q86TU7 594 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 CPNE8Q86YQ8 564 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 CCDC117Q8IWD4 279 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 FRMD1Q8N878 549 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 NIPA2Q8N8Q9 360 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 KDM1BQ8NB78 822 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 TBC1D31Q96DN5 1066 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 MRGPRX1Q96LB2 322 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 SNRNP25Q9BV90 132 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 MKRN2Q9H000 416 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 DEF6Q9H4E7 631 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 MTG2Q9H4K7 406 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 CD93Q9NPY3 652 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 ZNHIT6Q9NWK9 470 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 GPATCH2LQ9NWQ4 482 aa10.07□□□□□ -0.8
CLK3-220ENST00000567992 SMG5Q9UPR3 1016 aaKnown RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 EP300Q09472 2414 aaPredicted RBP10.07□□□□□ -0.8
CLK3-220ENST00000567992 FAM186AA6NE01 2351 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 ILVBLA1L0T0 632 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 TTC34A8MYJ7 566 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 SNAP91O60641 907 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 ALDH1A2O94788 518 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 MOCS3O95396 460 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 LCA5LO95447 670 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 LMNAP02545 664 aaKnown RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 EPHX1P07099 455 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 RHOCP08134 193 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 TMEM253P0C7T8 217 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 RHOQP17081 205 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 BCKDHBP21953 392 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 GLDCP23378 1020 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 CDC25BP30305 580 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 PCK1P35558 622 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 P2RY2P41231 377 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 MRE11P49959 708 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 VASPP50552 380 aaPredicted RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 OXCT1P55809 520 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 ECT2LQ008S8 904 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 SLC25A11Q02978 314 aaKnown RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 STARD3Q14849 445 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 E2F5Q15329 346 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 HNRNPA1L2Q32P51 320 aaKnown RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 C6orf118Q5T5N4 469 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 TXNRD3NBQ6F5E7 133 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 SDE2Q6IQ49 451 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 ZNF783Q6ZMS7 281 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 OR7D4Q8NG98 312 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 ZNF564Q8TBZ8 553 aaPredicted RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 RPL10LQ96L21 214 aaKnown RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 CCDC42Q96M95 316 aa10.06□□□□□ -0.8
CLK3-220ENST00000567992 KCTD15Q96SI1 283 aaPredicted RBP10.06□□□□□ -0.8
CLK3-220ENST00000567992 NOL6Q9H6R4 1146 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms