RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	NAA35	Q5VZE5	725 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	RNF219	Q5W0B1	726 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	ZNF776	Q68DI1	518 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	ARC	Q7LC44	396 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	CCAR2	Q8N163	923 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	EPS8L1	Q8TE68	723 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	GANC	Q8TET4	914 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	SLC20A1	Q8WUM9	679 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	IGSF8	Q969P0	613 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	PGAP3	Q96FM1	320 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	MYO19	Q96H55	970 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	RPL10L	Q96L21	214 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	MRGPRX3	Q96LB0	322 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	C1orf74	Q96LT6	269 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	RPRD1A	Q96P16	312 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	SPAG5	Q96R06	1193 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	ERGIC2	Q96RQ1	377 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	FAM129B	Q96TA1	746 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	TBCB	Q99426	244 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	FEM1A	Q9BSK4	669 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	GTPBP2	Q9BX10	602 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	TKTL2	Q9H0I9	626 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	RSPH9	Q9H1X1	276 aa	Predicted RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	MTG2	Q9H4K7	406 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	CAPN10	Q9HC96	672 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	RTN4	Q9NQC3	1192 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	PIGV	Q9NUD9	493 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	TMEM59L	Q9UK28	342 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	NOCT	Q9UK39	431 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	VANGL2	Q9ULK5	521 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	SCML1	Q9UN30	329 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	NCKAP1	Q9Y2A7	1128 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	HS3ST4	Q9Y661	456 aa		7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	MAP1B	P46821	2468 aa	Known RBP	7.13	□□□□□ -1.27
SF3B3-209	ENST00000567635	ITIH6	Q6UXX5	1313 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635		A0A1B0GTW7	788 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	FAM170A	A1A519	330 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SMTNL1	A8MU46	457 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	UPK3BL1	B0FP48	263 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	UPK3BL2	E5RIL1	263 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	EPHB6	O15197	1021 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CLDN11	O75508	207 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CYP1A1	P04798	512 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CEACAM1	P13688	526 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	PDGFRA	P16234	1089 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	PTMS	P20962	102 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CSRP1	P21291	193 aa	Known RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	MMP8	P22894	467 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	MZF1	P28698	734 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	ACSL1	P33121	698 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	MAPK8	P45983	427 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SULT1E1	P49888	294 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	ATXN3	P54252	364 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CDH4	P55283	916 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	FMO1	Q01740	532 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CENPC	Q03188	943 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	NCAPH	Q15003	741 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	TTC31	Q49AM3	519 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	C5orf22	Q49AR2	442 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	C2CD6	Q53TS8	623 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SH3PXD2A	Q5TCZ1	1133 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	DCAF12L1	Q5VU92	463 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	OTUD1	Q5VV17	481 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CXorf57	Q6NSI4	855 aa	Known RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	LRSAM1	Q6UWE0	723 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	LRRC31	Q6UY01	552 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	TRIM72	Q6ZMU5	477 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	USP30	Q70CQ3	517 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	C14orf80	Q86SX3	495 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CIR1	Q86X95	450 aa	Predicted RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	CACUL1	Q86Y37	369 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	DHX40	Q8IX18	779 aa	Known RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	HDDC3	Q8N4P3	179 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	AOPEP	Q8N6M6	819 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SLC30A5	Q8TAD4	765 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SLC39A7	Q92504	469 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	HAPLN3	Q96S86	360 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	OMD	Q99983	421 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	ADAM33	Q9BZ11	813 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	ZDHHC5	Q9C0B5	715 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	BTBD1	Q9H0C5	482 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	MIR1-1HG	Q9H1L0	117 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	HSD3B7	Q9H2F3	369 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	PABPC3	Q9H361	631 aa	Known RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	SGK2	Q9HBY8	427 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	FBXL12	Q9NXK8	326 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	ARHGEF38	Q9NXL2	777 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	TMEM63C	Q9P1W3	806 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	EIF2B4	Q9UI10	523 aa	Known RBP	7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	TBC1D30	Q9Y2I9	924 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	OR51B4	Q9Y5P0	310 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	PLXNA2	O75051	1894 aa		7.12	□□□□□ -1.27
SF3B3-209	ENST00000567635	DRGX	A6NNA5	263 aa		7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	GIPC1	O14908	333 aa		7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	MID1	O15344	667 aa		7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	BCAT2	O15382	392 aa	Predicted RBP	7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	OPHN1	O60890	802 aa		7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	SRGAP2	O75044	1071 aa		7.11	□□□□□ -1.27
SF3B3-209	ENST00000567635	CNTN5	O94779	1100 aa		7.11	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms