RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ORAI3Q9BRQ5 295 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 ACE2Q9BYF1 805 aaPredicted RBP19.32■□□□□ 0.68
CLN3-218ENST00000565688 NEUROG2Q9H2A3 272 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 SERGEFQ9UGK8 458 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 SLCO3A1Q9UIG8 710 aa19.32■□□□□ 0.68
CLN3-218ENST00000565688 A0A1W2PPC4 97 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 VILLO15195 856 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 PCDHGA12O60330 932 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 GOT1P17174 413 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 C5AR1P21730 350 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 KRT9P35527 623 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 CTSKP43235 329 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 GRK6P43250 576 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 PLK1P53350 603 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 TPD52L1Q16890 204 aaPredicted RBP19.31■□□□□ 0.68
CLN3-218ENST00000565688 INAVAQ3KP66 663 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 SND1Q7KZF4 910 aaKnown RBP eCLIP19.31■□□□□ 0.682e-7■■■□□ 14.9
CLN3-218ENST00000565688 PASD1Q8IV76 773 aa19.31■□□□□ 0.68
CLN3-218ENST00000565688 ZFYVE26Q68DK2 2539 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 SYNJ2BP-COX16A0A087WUM0 186 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 PDGFRAP16234 1089 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 PSMD8P48556 350 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 VASPP50552 380 aaPredicted RBP19.3■□□□□ 0.68
CLN3-218ENST00000565688 CCR5P51681 352 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 APBA1Q02410 837 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 CCNI2Q6ZMN8 369 aaPredicted RBP19.3■□□□□ 0.68
CLN3-218ENST00000565688 DSG4Q86SJ6 1040 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 FAM114A1Q8IWE2 563 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 STK40Q8N2I9 435 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 PTPRN2Q92932 1015 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 RPRD1AQ96P16 312 aaPredicted RBP19.3■□□□□ 0.68
CLN3-218ENST00000565688 SPAG5Q96R06 1193 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 SYNCQ9H7C4 482 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 COX16Q9P0S2 106 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 ITPR1Q14643 2758 aa19.3■□□□□ 0.68
CLN3-218ENST00000565688 CABIN1Q9Y6J0 2220 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 H0Y8X5 98 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 GRAP2O75791 330 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 IL1BP01584 269 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 MZF1P28698 734 aaPredicted RBP19.29■□□□□ 0.68
CLN3-218ENST00000565688 STK19P49842 368 aaPredicted RBP19.29■□□□□ 0.68
CLN3-218ENST00000565688 BPIFB4P59827 614 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 MAN2A1Q16706 1144 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 OR6B2Q6IFH4 312 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 CXorf57Q6NSI4 855 aaKnown RBP19.29■□□□□ 0.68
CLN3-218ENST00000565688 FBXL22Q6P050 247 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 OLFML1Q6UWY5 402 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 LAYNQ6UX15 382 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 FAM183BPQ6ZVS7 135 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 SLC26A9Q7LBE3 791 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 CIR1Q86X95 450 aaPredicted RBP19.29■□□□□ 0.68
CLN3-218ENST00000565688 ZDHHC17Q8IUH5 632 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 AADATQ8N5Z0 425 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 C1orf131Q8NDD1 294 aaKnown RBP19.29■□□□□ 0.68
CLN3-218ENST00000565688 SIX2Q9NPC8 291 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 RRN3Q9NYV6 651 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 DNAJC12Q9UKB3 198 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 BTBD3Q9Y2F9 522 aa19.29■□□□□ 0.68
CLN3-218ENST00000565688 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 TNFSF14O43557 240 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 DAB1O75553 588 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 DKK1O94907 266 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 ATXN1LP0C7T5 689 aaKnown RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 PRKCSHP14314 528 aaPredicted RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 NOS2P35228 1153 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 ADPRHP54922 357 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 SLC6A3Q01959 620 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 NME3Q13232 169 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 ZNF177Q13360 481 aaPredicted RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 AUHQ13825 339 aaKnown RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 KCNT1Q5JUK3 1230 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 ZNF397Q8NF99 534 aaPredicted RBP19.28■□□□□ 0.68
CLN3-218ENST00000565688 OR14C36Q8NHC7 312 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 SLC6A18Q96N87 628 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 TMEM51Q9NW97 253 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 TOR4AQ9NXH8 423 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 SLC25A13Q9UJS0 675 aa19.28■□□□□ 0.68
CLN3-218ENST00000565688 NBEAQ8NFP9 2946 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 C10orf142B7Z368 130 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 FOXN3O00409 490 aaPredicted RBP19.27■□□□□ 0.68
CLN3-218ENST00000565688 KCNK3O14649 394 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 CLDN11O75508 207 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 ERBB2P04626 1255 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 CAPNS1P04632 268 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 CD38P28907 300 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 CLCN1P35523 988 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 CENPCQ03188 943 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 SCAPQ12770 1279 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 KCNJ12Q14500 433 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 SLC45A4Q5BKX6 768 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 FAM46CQ5VWP2 391 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 TMPRSS7Q7RTY8 843 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 SLC47A2Q86VL8 602 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 PROSER1Q86XN7 944 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 FAM71AQ8IYT1 594 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 FRS2Q8WU20 508 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 OR8D1Q8WZ84 308 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 FEM1AQ9BSK4 669 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 KDM4CQ9H3R0 1056 aa19.27■□□□□ 0.68
CLN3-218ENST00000565688 NDST4Q9H3R1 872 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms