RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PPP1R13BQ96KQ4 1090 aa17.67■□□□□ 0.42
CLN3-216ENST00000565316 RPL10LQ96L21 214 aaKnown RBP17.67■□□□□ 0.42
CLN3-216ENST00000565316 KCNK3O14649 394 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 HSF2BPO75031 334 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 GOT1P17174 413 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 C5AR1P21730 350 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 PON1P27169 355 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 CCR1P32246 355 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 STK19P49842 368 aaPredicted RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 OXCT1P55809 520 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 ELAVL3Q14576 367 aaKnown RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 ARHGAP44Q17R89 818 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 EXOC3L4Q17RC7 722 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 EFHC1Q5JVL4 640 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 RNF219Q5W0B1 726 aaPredicted RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 CXorf57Q6NSI4 855 aaKnown RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 FBXL22Q6P050 247 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 STK40Q8N2I9 435 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 FRS2Q8WU20 508 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 FAM131CQ96AQ9 280 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 SLC6A18Q96N87 628 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 OMDQ99983 421 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 ACE2Q9BYF1 805 aaPredicted RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 FAM204AQ9H8W3 233 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 DDIT4Q9NX09 232 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 TPX2Q9ULW0 747 aaKnown RBP17.66■□□□□ 0.42
CLN3-216ENST00000565316 CEP83Q9Y592 693 aa17.66■□□□□ 0.42
CLN3-216ENST00000565316 PLXNB3Q9ULL4 1909 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 A0A1B0GTQ1 180 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 A0A1B0GVM2 712 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 TCAF2A6NFQ2 919 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 FAM47DPA6NHR8 397 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 TNFSF14O43557 240 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 WNT1P04628 370 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 PDGFRAP16234 1089 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 ABCB4P21439 1286 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 MZF1P28698 734 aaPredicted RBP17.65■□□□□ 0.42
CLN3-216ENST00000565316 USP8P40818 1118 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 PSMD8P48556 350 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 MTA1Q13330 715 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 RABGAP1LQ5R372 815 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 SND1Q7KZF4 910 aaKnown RBP eCLIP17.65■□□□□ 0.421e-7■■■□□ 15.8
CLN3-216ENST00000565316 ADAT2Q7Z6V5 191 aaKnown RBP17.65■□□□□ 0.42
CLN3-216ENST00000565316 CIR1Q86X95 450 aaPredicted RBP17.65■□□□□ 0.42
CLN3-216ENST00000565316 ALG14Q96F25 216 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 SIX2Q9NPC8 291 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 APC2O95996 2303 aa17.65■□□□□ 0.42
CLN3-216ENST00000565316 A0A1W2PR77 199 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 NNMTP40261 264 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 ADPRHP54922 357 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 C21orf59P57076 290 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 C5orf22Q49AR2 442 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 OLFML1Q6UWY5 402 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 C11orf57Q6ZUT1 292 aaPredicted RBP17.64■□□□□ 0.41
CLN3-216ENST00000565316 FAM183BPQ6ZVS7 135 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 SKA1Q96BD8 255 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 NOX5Q96PH1 765 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 SPAG5Q96R06 1193 aa17.64■□□□□ 0.41
CLN3-216ENST00000565316 ACACAQ13085 2346 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 LATO43561 262 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 ATP9BO43861 1147 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 GRAP2O75791 330 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 ERBB2P04626 1255 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 VAV1P15498 845 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 CD38P28907 300 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 DRD3P35462 400 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 CLCN1P35523 988 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 UBE2HP62256 183 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 PTK2Q05397 1052 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 AUHQ13825 339 aaKnown RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 CAMK4Q16566 473 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 LRSAM1Q6UWE0 723 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 SLC26A9Q7LBE3 791 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 PASD1Q8IV76 773 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 C1orf131Q8NDD1 294 aaKnown RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 ZNF397Q8NF99 534 aaPredicted RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 PPP1R9BQ96SB3 815 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 ELF4Q99607 663 aaPredicted RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 FEM1AQ9BSK4 669 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 CCDC86Q9H6F5 360 aaKnown RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 AJAP1Q9UKB5 411 aaPredicted RBP17.63■□□□□ 0.41
CLN3-216ENST00000565316 OR51B4Q9Y5P0 310 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 TMEM131Q92545 1883 aa17.63■□□□□ 0.41
CLN3-216ENST00000565316 PTPRBP23467 1997 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 SYNJ2BP-COX16A0A087WUM0 186 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 FOXN3O00409 490 aaPredicted RBP17.62■□□□□ 0.41
CLN3-216ENST00000565316 WNT9AO14904 365 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 DAB1O75553 588 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 IL1BP01584 269 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 IRAK1P51617 712 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 SNX16P57768 344 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 SLC6A3Q01959 620 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 CENPCQ03188 943 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 SHBQ15464 509 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 INAVAQ3KP66 663 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 PTPN20Q4JDL3 420 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 OTUD1Q5VV17 481 aaPredicted RBP17.62■□□□□ 0.41
CLN3-216ENST00000565316 OR6B2Q6IFH4 312 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 DPY19L2P1Q6NXN4 242 aa17.62■□□□□ 0.41
CLN3-216ENST00000565316 CREBRFQ8IUR6 639 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms