RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 TRIP11Q15643 1979 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 A0A087WZ62 844 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 TMEM114B3SHH9 223 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PDLIM1O00151 329 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 GABBR2O75899 941 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 XRCC1P18887 633 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 GLDCP23378 1020 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 MPSTP25325 297 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 EPHA3P29320 983 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 CYLC2Q14093 348 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 ADGRE1Q14246 886 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 TBC1D25Q3MII6 688 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 SPANXN3Q5MJ09 141 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 NXNQ6DKJ4 435 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 FSTL4Q6MZW2 842 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 KLHDC10Q6PID8 442 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PID1Q7Z2X4 250 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 CATSPER1Q8NEC5 780 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 OR52K1Q8NGK4 314 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 FCRL3Q96P31 734 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PRPF18Q99633 342 aaKnown RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 FDXACB1Q9BRP7 624 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PDZD7Q9H5P4 517 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 EIF2B3Q9NR50 452 aaKnown RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 DDX18Q9NVP1 670 aaKnown RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 BCAP29Q9UHQ4 241 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 LCTP09848 1927 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 G3V2L1 256 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 USP12O75317 370 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 TRPA1O75762 1119 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 TNFAIP8O95379 198 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 AMHP03971 560 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 SETSIPP0DME0 302 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 DPEP1P16444 411 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 PKDCCQ504Y2 493 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 HSP90AA5PQ58FG0 334 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 BHLHE22Q8NFJ8 381 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 OR6B3Q8NGW1 331 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 RCN3Q96D15 328 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 AGAP2Q99490 1192 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 NMRAL1Q9HBL8 299 aa14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.28□□□□□ -0.12
VPS9D1-202ENST00000561976 SYNJ2BP-COX16A0A087WUM0 186 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 MYOCOSA0A1B0GUC4 107 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 HNRNPRO43390 633 aaKnown RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 TMCC1O94876 653 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 PENKP01210 267 aaPredicted RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 LTFP02788 710 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 CHRNGP07510 517 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ADORA2BP29275 332 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 USP46P62068 366 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 GK3PQ14409 553 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 SOWAHAQ2M3V2 549 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 C6orf52Q5T4I8 152 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ZFP1Q6P2D0 407 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 PLPPR4Q7Z2D5 763 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ZDHHC17Q8IUH5 632 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 MICALL2Q8IY33 904 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 DNAAF3Q8N9W5 541 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ADAM32Q8TC27 787 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ZFRQ96KR1 1074 aaKnown RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 GATA5Q9BWX5 397 aaPredicted RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 MRPS26Q9BYN8 205 aaKnown RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 MAF1Q9H063 256 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 COX16Q9P0S2 106 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ZNF112Q9UJU3 913 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 ADAM28Q9UKQ2 775 aa14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 GNEQ9Y223 722 aaKnown RBP14.27□□□□□ -0.12
VPS9D1-202ENST00000561976 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 SAT1P21673 171 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 EDNRBP24530 442 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 LIMK2P53671 638 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 ART3Q13508 389 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 LSM12Q3MHD2 195 aaKnown RBP14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 SH2D4BQ5SQS7 431 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 SEL1L3Q68CR1 1132 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 METTL25Q8N6Q8 603 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 RP9Q8TA86 221 aaKnown RBP14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 URGCPQ8TCY9 931 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 NUF2Q9BZD4 464 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 LRRC40Q9H9A6 602 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 PREBQ9HCU5 417 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 DOCK1Q14185 1865 aa14.27□□□□□ -0.13
VPS9D1-202ENST00000561976 SSC5DA1L4H1 1573 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 STRNO43815 780 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 MPOP05164 745 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 C2P06681 752 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 ARF4P18085 180 aaPredicted RBP14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 ZNF280AP59817 542 aaPredicted RBP14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 TMEM259Q4ZIN3 620 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 OLFML2BQ68BL8 750 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 ZNF567Q8N184 647 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 AFG1LQ8WV93 481 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 CATSPER2Q96P56 530 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 AKT3Q9Y243 479 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 hCG_2014768A0A024R1R8 64 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 HDAC3O15379 428 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 HBP1O60381 514 aa14.26□□□□□ -0.13
VPS9D1-202ENST00000561976 FAM58BPP0C7Q3 252 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms