RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 AZIN2Q96A70 460 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 CEP83Q9Y592 693 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 EIF4E1BA6NMX2 242 aaKnown RBP19.61■□□□□ 0.73
VPS35-202ENST00000561713 ERBB2P04626 1255 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 IGHV4-34P06331 123 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 ST8SIA6P61647 398 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 YWHAZP63104 245 aaKnown RBP19.61■□□□□ 0.73
VPS35-202ENST00000561713 TPD52L1Q16890 204 aaPredicted RBP19.61■□□□□ 0.73
VPS35-202ENST00000561713 PRAMEF14Q5SWL7 426 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 GANCQ8TET4 914 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 TTC17Q96AE7 1141 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 RPL10LQ96L21 214 aaKnown RBP19.61■□□□□ 0.73
VPS35-202ENST00000561713 CLSTN2Q9H4D0 955 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 THAP9Q9H5L6 903 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 FBRSQ9HAH7 460 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 SGK2Q9HBY8 427 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 DDIT4Q9NX09 232 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 FTSJ1Q9UET6 329 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 ERVW-1Q9UQF0 538 aa19.61■□□□□ 0.73
VPS35-202ENST00000561713 FAM47DPA6NHR8 397 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 F5H5T6 163 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 MID1O15344 667 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 PDGFRAP16234 1089 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 PSMD8P48556 350 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 HNRNPA1L2Q32P51 320 aaKnown RBP19.6■□□□□ 0.73
VPS35-202ENST00000561713 PTPN20Q4JDL3 420 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 SLC47A2Q86VL8 602 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 PPP1R13BQ96KQ4 1090 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 BTN2A3PQ96KV6 586 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 DCBLD2Q96PD2 775 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 TRIM62Q9BVG3 475 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 IRX2Q9BZI1 471 aaPredicted RBP19.6■□□□□ 0.73
VPS35-202ENST00000561713 RSPH9Q9H1X1 276 aaPredicted RBP19.6■□□□□ 0.73
VPS35-202ENST00000561713 PABPC3Q9H361 631 aaKnown RBP19.6■□□□□ 0.73
VPS35-202ENST00000561713 SLCO3A1Q9UIG8 710 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 DNAJC12Q9UKB3 198 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 DOCK4Q8N1I0 1966 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 HELZ2Q9BYK8 2649 aaKnown RBP19.6■□□□□ 0.73
VPS35-202ENST00000561713 ASXL3Q9C0F0 2248 aa19.6■□□□□ 0.73
VPS35-202ENST00000561713 A0A1W2PP55 124 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 PLK4O00444 970 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 ASLP04424 464 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 VAV1P15498 845 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 CLDN6P56747 220 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 C21orf59P57076 290 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 MAN2A1Q16706 1144 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 OTUD1Q5VV17 481 aaPredicted RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 KIAA0895LQ68EN5 471 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 OR6B2Q6IFH4 312 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 OLFML1Q6UWY5 402 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 BEND5Q7L4P6 421 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 GATAD2AQ86YP4 633 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 MMAAQ8IVH4 418 aaKnown RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 CCDC117Q8IWD4 279 aaPredicted RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 ZNF557Q8N988 423 aaPredicted RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 SLC6A18Q96N87 628 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 SLC2A13Q96QE2 648 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 PRMT1Q99873 361 aaKnown RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 ACE2Q9BYF1 805 aaPredicted RBP19.59■□□□□ 0.73
VPS35-202ENST00000561713 SUN2Q9UH99 717 aa19.59■□□□□ 0.73
VPS35-202ENST00000561713 A0A1B0GTQ1 180 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 GTPBP10A4D1E9 387 aaKnown RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 CBX4O00257 560 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 VILLO15195 856 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 ZIC2O95409 532 aaPredicted RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 PRKCSHP14314 528 aaPredicted RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 MZF1P28698 734 aaPredicted RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 RACK1P63244 317 aaKnown RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 CDK17Q00537 523 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 NME3Q13232 169 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 CST6Q15828 149 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 INAVAQ3KP66 663 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 TMPRSS12Q86WS5 348 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 CCAR2Q8N163 923 aaKnown RBP19.58■□□□□ 0.72
VPS35-202ENST00000561713 STK40Q8N2I9 435 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 ATP6V0D2Q8N8Y2 350 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 MLKLQ8NB16 471 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 PIP4K2CQ8TBX8 421 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 RNF34Q969K3 372 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 EBF2Q9HAK2 575 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 FBXL12Q9NXK8 326 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 CHMP5Q9NZZ3 219 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 PCDHGC3Q9UN70 934 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 FHOD1Q9Y613 1164 aa19.58■□□□□ 0.72
VPS35-202ENST00000561713 KCNU1A8MYU2 1149 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 FOXN3O00409 490 aaPredicted RBP19.57■□□□□ 0.72
VPS35-202ENST00000561713 DFNA5O60443 496 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 HSF2BPO75031 334 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 DAB1O75553 588 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 MOCS3O95396 460 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 WNT1P04628 370 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 TFE3P19532 575 aaPredicted RBP19.57■□□□□ 0.72
VPS35-202ENST00000561713 CLCN1P35523 988 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 METAP1P53582 386 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 GALCP54803 685 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 DNAJC3Q13217 504 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 EIF4EBP2Q13542 120 aaPredicted RBP19.57■□□□□ 0.72
VPS35-202ENST00000561713 RAPGEF1Q13905 1077 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 MIIPQ5JXC2 388 aa19.57■□□□□ 0.72
VPS35-202ENST00000561713 C9orf64Q5T6V5 341 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms